milkcookie

milkcookie's Stars

• eastgenomics/eggd_001_Reference

  Language:Perl11

• ruanjue/bsalign

  Banded Striped DNA Sequence Alignment

  Language:C473

• vaquerizaslab/fanc

  FAN-C: Framework for the ANalysis of C-like data

  Language:Python10414

• odelaneau/shapeit5

  Segmented HAPlotype Estimation and Imputation Tool

  Language:C++629

• rcedgar/muscle

  Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.

  Language:C++18822

• cancer-genomics/gemini_wflow

  Language:R10

• Ming-Lian/NGS-analysis

  二代测序数据分析

  339160

• kloetzl/libdna

  ♥ Essential Functions for DNA Manipulation

  Language:C20

• hosseinmoein/DataFrame

  C++ DataFrame for statistical, Financial, and ML analysis -- in modern C++ using native types and contiguous memory storage

  Language:C++2.4k307

• kaixindelele/ChatPaper

  Use ChatGPT to summarize the arXiv papers. 全流程加速科研，利用chatgpt进行论文全文总结+专业翻译+润色+审稿+审稿回复

  Language:Python18.2k1.9k

• igvteam/igv-reports

  Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

  Language:Python34351

• bikalims/bika.lims

  Open Source Web-based Laboratory Information Management System

  Language:Python223168

• Personalis-DASH/DASH

  Language:Jupyter Notebook92

• benwbooth/bam2bedgraph.rs

  Convert BAM alignment files into bedGraph and bigWig files

  Language:Rust11

• xiongxu/HighPerformanceNGS

  hight performance & useful tools for working with fastq and bam files

  Language:C296

• humanlongevity/HLA

  xHLA: Fast and accurate HLA typing from short read sequence data

  Language:Jupyter Notebook10252

• VanLoo-lab/ASCAT.sc

  Language:HTML138

• jeremymcrae/liftover

  liftover for python, made fast with cython

  Language:C++756

• Nik-Zainal-Group/signature.tools.lib

  R package containing useful functions for mutational signature analysis

  Language:R8026

• begeekmyfriend/leetcode

  LeetCode in pure C

  Language:C3.1k804

• VanLoo-lab/ascat

  ASCAT R package

  Language:HTML16285

• oicr-gsi/sequenza

  Workflow for Sequenza, cellularity and ploidy

  Language:R162

• sztup/scarHRD

  Language:HTML10252

• stevekm/IGV-snapshot-automator

  Script to automatically create and run IGV snapshot batchscripts

  Language:Python13750

• al-jshen/compute

  Scientific and statistical computing with Rust.

  Language:Rust621

• aseyboldt/fastq-rs

  Language:Rust4613

• ekimb/rust-mdbg

  minimizer-space de Bruijn graphs (mdBG) for whole genome assembly

  Language:Rust17418

• rust-bio/rust-bio

  This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

  Language:Rust1.6k204

• rust-bio/rust-htslib

  This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

  Language:Rust29776

• daliansky/XiaoXinPro-13-hackintosh

  Lenovo XiaoXin Pro 13 2019 Hackintosh

  Language:C++879136