milkschen

milkschen's Stars

• alshai/levioSAM

  Lift-over alignments from variant-aware references

  Language:C++344

• cdarby/samovar

  Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters

  Language:Python242

• BenLangmead/bowtie-majref

  Scripts related to building major-allele references for Bowtie and Bowtie 2

  Language:Shell121

• dnbaker/dashing

  Fast and accurate genomic distances using HyperLogLog

  Language:C++16011

• rrwick/Basecalling-comparison

  A comparison of different Oxford Nanopore basecallers

  Language:Python31354

• randalburns/atidic-fall18

  Advanced Topics in Data-Intensive Computing

  Language:Shell71

• clyang/welly

  A powerful BBS client for MacOS users

  Language:Objective-C59845

• jts/nanopolish

  Signal-level algorithms for MinION data

  Language:C++567159

• mcfrith/last-rna

  Language:Python496

• lh3/ksw2

  Global alignment and alignment extension

  Language:C12725

• isovic/graphmap

  GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:

  Language:C++18045

• Cibiv/NextGenMap

  NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows analysing large scale datasets even with increased SNP rates or higher error rates (e.g. caused by specialized experimental protocols) and avoids biases caused by highly variable regions in the genome.

  Language:C++868

• lh3/bwa

  Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

  Language:C1.5k556