milkschen's Stars
marbl/HG002
A complete diploid human genome
kishwarshafin/pepper
PEPPER-Margin-DeepVariant
oma219/spumoni
Pan-Genomic Matching Statistics
HKU-BAL/Clair3
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
weitzner/jhu-thesis-template
JHU Thesis Template
lh3/miniwfa
A reimplementation of the WaveFront Alignment algorithm at low memory
mozack/abra2
ABRA2
martinus/robin-hood-hashing
Fast & memory efficient hashtable based on robin hood hashing for C++11/14/17/20
seq-lang/seq
A high-performance, Pythonic language for bioinformatics
liguowang/CrossMap
CrossMap is a python program to lift over genome coordinates from one genome version to another.
human-pangenomics/hpgp-data
Data from the Human PanGenomics Project
evotools/nf-LO
A Nextflow workflow to generate lift over files for any pair of genomes
rust-bio/rust-htslib
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
rust-bio/rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
maojanlin/gAIRRsuite
Profiling Germline Adaptive Immune Receptor Repertoire with gAIRR Suite
simongog/sdsl-lite
Succinct Data Structure Library 2.0
saketkc/pysradb
Package for fetching metadata and downloading data from SRA/ENA/GEO
marbl/Winnowmap
Long read / genome alignment software
jltsiren/simple-sds
Simple succinct data structures (in Rust)
aljohn0422/nbacli
NBA live in your terminal.
yenchiah/project-website-template
A HTML/CSS Template for Building Projects or Personal Websites
schmeing/ReSeq
More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original
vgteam/vg
tools for working with genome variation graphs
k-sys/covid-19
A collection of work related to COVID-19
hftsai256/rime-liur-lua
lua擴充版
google/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
ttscoff/mdless
DerrickWood/kraken2
The second version of the Kraken taxonomic sequence classification system
samtools/htslib
C library for high-throughput sequencing data formats
seqan/seqan
SeqAn's official repository.