milkschen

milkschen's Stars

• marbl/HG002

  A complete diploid human genome

  875

• kishwarshafin/pepper

  PEPPER-Margin-DeepVariant

  Language:Python23642

• oma219/spumoni

  Pan-Genomic Matching Statistics

  Language:C++457

• HKU-BAL/Clair3

  Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

  Language:Python23127

• weitzner/jhu-thesis-template

  JHU Thesis Template

  Language:TeX3785

• lh3/miniwfa

  A reimplementation of the WaveFront Alignment algorithm at low memory

  Language:C493

• mozack/abra2

  ABRA2

  Language:Java909

• martinus/robin-hood-hashing

  Fast & memory efficient hashtable based on robin hood hashing for C++11/14/17/20

  Language:C++1.5k145

• seq-lang/seq

  A high-performance, Pythonic language for bioinformatics

  Language:C++69750

• liguowang/CrossMap

  CrossMap is a python program to lift over genome coordinates from one genome version to another.

  Language:Python7224

• human-pangenomics/hpgp-data

  Data from the Human PanGenomics Project

  604

• evotools/nf-LO

  A Nextflow workflow to generate lift over files for any pair of genomes

  Language:Nextflow5110

• rust-bio/rust-htslib

  This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

  Language:Rust29776

• rust-bio/rust-bio

  This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

  Language:Rust1.6k204

• maojanlin/gAIRRsuite

  Profiling Germline Adaptive Immune Receptor Repertoire with gAIRR Suite

  Language:Python61

• simongog/sdsl-lite

  Succinct Data Structure Library 2.0

  Language:C++2.2k346

• saketkc/pysradb

  Package for fetching metadata and downloading data from SRA/ENA/GEO

  Language:Python30750

• marbl/Winnowmap

  Long read / genome alignment software

  Language:C24222

• jltsiren/simple-sds

  Simple succinct data structures (in Rust)

  Language:Rust467

• aljohn0422/nbacli

  NBA live in your terminal.

  Language:Go5

• yenchiah/project-website-template

  A HTML/CSS Template for Building Projects or Personal Websites

  Language:HTML481557

• schmeing/ReSeq

  More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original

  Language:C++503

• vgteam/vg

  tools for working with genome variation graphs

  Language:C++1.1k193

• k-sys/covid-19

  A collection of work related to COVID-19

  Language:Jupyter Notebook1.4k432

• hftsai256/rime-liur-lua

  lua擴充版

  Language:Shell284

• google/deepvariant

  DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

  Language:Python3.2k709

• ttscoff/mdless

  Language:Ruby83939

• DerrickWood/kraken2

  The second version of the Kraken taxonomic sequence classification system

  Language:C++701270

• samtools/htslib

  C library for high-throughput sequencing data formats

  Language:C795446

• seqan/seqan

  SeqAn's official repository.

  Language:C++469171