Pinned Repositories
levioSAM
Lift-over alignments from variant-aware references
FORGe
Code for building and testing variant ranking strategies
reference_flow
Reducing reference bias using multiple population reference genomes
chaintools
Utilities for the genomic chain format
leviosam2
Fast and accurate coordinate conversion between assemblies
levioSAM2-experiments
Experiments for levioSAM
LZSS_verilog
matchall
Accurate matching of variant alleles using local haplotypes
openchromatinprediction
milkschen's Repositories
milkschen/leviosam2
Fast and accurate coordinate conversion between assemblies
milkschen/chaintools
Utilities for the genomic chain format
milkschen/levioSAM2-experiments
Experiments for levioSAM
milkschen/LZSS_verilog
milkschen/matchall
Accurate matching of variant alleles using local haplotypes
milkschen/openchromatinprediction
milkschen/approx_counting_bloom_filter
milkschen/bioconda-recipes
Conda recipes for the bioconda channel.
milkschen/bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
milkschen/chm13_rdna_chain
milkschen/htslib
C library for high-throughput sequencing data formats
milkschen/pav
Phased assembly variant caller
milkschen/SC3
A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
milkschen/scratch
milkschen/svpop
Variant annotation and merging pipeline
milkschen/varmatch
robust matching of small variant datasets using flexible scoring schemes
milkschen/vcf2msa
convert a multi-sample VCF file to a multiple sequence alignment (C)
milkschen/vim_settings