Issues
- 3
Picard ValidateSamFile halts for 100 `Mate CIGAR String (MC Attribute) present for a read whose mate is unmapped` Error after lifting from chm13v2 to hg38
#71 opened by yunkaig - 2
Possible bug in leviosam2.py
#70 opened by Heather1999 - 4
Regarding time it takes to run leviosam2
#68 opened by Heather1999 - 5
Phasing after levioSAM2
#63 opened by oneeeeeehuang - 1
Leviosam2 binary and python script questions
#64 opened by insilicool - 9
Installation error
#60 opened by francicco - 3
- 2
"ERROR: ': ' is not a valid token in plain flow (unquoted) scalars - While using selective re-mapping
#34 opened by alisondiazc - 2
MAPQ of unmapped reads
#33 opened by canfirtina - 2
No length map is found. Please set `-F`.
#47 opened by alisonomica - 8
Does not build on arm64
#3 opened by jdidion - 1
Updating docker container to 0.3.0
#41 opened by zhemingfan - 3
small chain gaps cause unliftable alignments
#40 opened by alshai - 4
Integrating strobealign for pe-mapping?
#11 opened by ksahlin - 1
Error when running full workflow using `bwa mem`
#21 opened by jdidion - 4
`lift` rules are confusing and/or broken
#20 opened by jdidion - 1
Bugs in leviosam2.sh
#18 opened by jdidion - 4
leviosam2 for nanopore?
#4 opened by bluenote-1577 - 1
- 5
Alignment errors after Leviosam2?
#13 opened by kokyriakidis - 0
Read 0 BED records (0 contigs)
#12 opened by kokyriakidis - 1
how to index bam after liftover
#6 opened by zhoudreames - 5
hg38 to hg19 performance
#10 opened by kokyriakidis - 4
- 1