Pinned Repositories
Clair3
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Clair3-MP
variant calling using with sequencing data from multiple platforms
Clair3-Trio
Clair3-Trio: variant calling in trio using Nanopore long-reads
ClusterV
ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data
ONT-TB-NF
Comprehensive pipeline for detection of TB from ONT adaptive sequencing and amplicon data.
_rHAT
DNA read alignment tool
deBGA
de Bruijn Graph-based read aligner
experiment
RENET2
RENET2: High-Performance Full-text Gene-Disease Relation Extraction with Iterative Training Data Expansion
sujunhao's Repositories
sujunhao/RENET2
RENET2: High-Performance Full-text Gene-Disease Relation Extraction with Iterative Training Data Expansion
sujunhao/_rHAT
DNA read alignment tool
sujunhao/deBGA
de Bruijn Graph-based read aligner
sujunhao/sujunhao.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
sujunhao/.tmux
Oh My Tmux! My pretty + versatile tmux configuration that just works (imho the best tmux configuration)
sujunhao/algorithms-1
Minimal examples of data structures and algorithms in Python
sujunhao/alphafold
Open source code for AlphaFold.
sujunhao/BERT-Relation-Extraction
PyTorch implementation for "Matching the Blanks: Distributional Similarity for Relation Learning" paper
sujunhao/bioconda-recipes
Conda recipes for the bioconda channel.
sujunhao/CalliNGS-NF
GATK RNA-Seq Variant Calling in Nextflow
sujunhao/Clair
Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling
sujunhao/Complete-Striped-Smith-Waterman-Library
sujunhao/deBWT
implementation of a BWT constructor
sujunhao/deep-photo-styletransfer
Code and data for paper "Deep Photo Style Transfer": https://arxiv.org/abs/1703.07511
sujunhao/deeplearning-biology
A list of deep learning implementations in biology
sujunhao/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
sujunhao/DoubletFinder_204_fix
R package for detecting doublets in single-cell RNA sequencing data
sujunhao/GERMLINE
compute IBD, base on GERMLINE version1.4.1, fix bug and add features
sujunhao/K-BERT
Source code of K-BERT
sujunhao/leviosam2
Fast and accurate coordinate conversion between assemblies
sujunhao/loguru
Python logging made (stupidly) simple
sujunhao/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
sujunhao/Sequoia
Repository for the Sequoia phylogeny reconstruction pipeline
sujunhao/shadowsocks
sujunhao/SurVirus
sujunhao/sv-benchmark
Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
sujunhao/vcflib
C++ library and cmdline tools for parsing and manipulating VCF files
sujunhao/vireo
Demultiplexing pooled scRNA-seq data with or without genotype reference
sujunhao/weapp-developer-guide
WeGene 微解读专业版开发者文档
sujunhao/wiki-website
Support site for Markdown Editor Typora