mingbao96

mingbao96's Stars

• evo-design/evo

  Biological foundation modeling from molecular to genome scale

  Language:Jupyter Notebook913106

• soedinglab/MMseqs2

  MMseqs2: ultra fast and sensitive search and clustering suite

  Language:C1.3k190

• jbloomlab/dms_tools2

  software for the analysis and visualization of deep mutational scanning data

  Language:Python3020

• ijhoskins/satmut_utils

  Simulation and variant calling in paired-end, targeted sequencing saturation mutagenesis data.

  Language:Python61

• marbl/canu

  A single molecule sequence assembler for genomes large and small.

  Language:C++652178

• sheinasim/HiFiAdapterFilt

  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).

  Language:Shell7917

• FowlerLab/Enrich2

  Tool for deep mutational scanning experiments.

  Language:Python4512

• santiago1234/iCodon

  iCodon customizes gene expression based on the codon composition

  Language:R133

• CenikLab/satmut_utils

  Simulation and variant calling in paired-end, targeted RNA-seq saturation mutagenesis data.

  Language:Python2

• torognes/vsearch

  Versatile open-source tool for microbiome analysis

  Language:C++653122

• OATML-Markslab/ProteinGym

  Official repository for the ProteinGym benchmarks

  Language:HTML20219

• lehner-lab/DiMSum

  An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies

  Language:R286

• dschaub95/GNNome-assembly_v2

  Learning to untangle genome assembly with graph neural networks.

  1

• lvrcek/GNNome-assembly

  Learning to untangle genome assembly with graph neural networks.

  Language:Python6911

• ablab/spades

  SPAdes Genome Assembler

  Language:C++731134

• alexdobin/STAR

  RNA-seq aligner

  Language:C1.8k500

• broadinstitute/pilon

  Pilon is an automated genome assembly improvement and variant detection tool

  Language:Scala33860

• LinearDesignSoftware/LinearDesign

  The LinearDesign mRNA design software.

  Language:C++14550

• brennanaba/ImmuneBuilder

  Predict the structure of immune receptor proteins

  Language:Jupyter Notebook4237

• google-deepmind/alphafold

  Open source code for AlphaFold.

  Language:Python12.2k2.2k

• vividvilla/csvtotable

  Simple command-line utility to convert CSV files to searchable and sortable HTML table.

  Language:Python1.1k113

• OpenGene/fastp

  An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

  Language:C++1.9k332

• NetaZuckerman/TCR2Rep

  The pipeline processes raw TCR sequences and exports a data table containing all IgBlast annotation, clonal assignment and clonal frequency data (for the 10 biggest clone). The pipeline also performs bioinformatic analyses, such as: clonal size distribution , CDR3 lengths distribution and VDJ segments frequencies.

  Language:R11

• zhangwei2015/IMonitor

  This script use to analyze the immune repertoire sequenced by high throughtput sequencing

  2413

• mikessh/migmap

  HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

  Language:Groovy5120

• milaboratory/mixcr

  MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.

  Language:Kotlin32178

• aquaskyline/SOAPdenovo-Trans

  SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome datasets from rice and mouse.

  Language:C3115

• weizhongli/cdhit

  Automatically exported from code.google.com/p/cdhit

  Language:Perl631127

• aidenlab/straw

  Extract data quickly from Juicebox via straw

  Language:C++6136

• josephmisiti/awesome-machine-learning

  A curated list of awesome Machine Learning frameworks, libraries and software.

  Language:Python64.9k14.6k