Pinned Repositories
abdockgen
awesome-protein-representation-learning
Awesome Protein Representation Learning
Continuous-Discrete-Convolution
DiffDock-PP
Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)
DSMBind
dyMEAN
This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
equidock_public
EquiDock: geometric deep learning for fast rigid 3D protein-protein docking
equiformer
[ICLR'23 Spotlight] Equiformer: Equivariant Graph Attention Transformer for 3D Atomistic Graphs
esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
ESM-GearNet
ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
minjiecheng's Repositories
minjiecheng/dyMEAN
This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
minjiecheng/abdockgen
minjiecheng/awesome-protein-representation-learning
Awesome Protein Representation Learning
minjiecheng/Continuous-Discrete-Convolution
minjiecheng/DiffDock-PP
Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)
minjiecheng/DSMBind
minjiecheng/equidock_public
EquiDock: geometric deep learning for fast rigid 3D protein-protein docking
minjiecheng/equiformer
[ICLR'23 Spotlight] Equiformer: Equivariant Graph Attention Transformer for 3D Atomistic Graphs
minjiecheng/esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
minjiecheng/ESM-GearNet
ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
minjiecheng/GeoDock
Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
minjiecheng/GMSL
minjiecheng/graph-classification
A collection of graph classification methods
minjiecheng/GraphCL
[NeurIPS 2020] "Graph Contrastive Learning with Augmentations" by Yuning You, Tianlong Chen, Yongduo Sui, Ting Chen, Zhangyang Wang, Yang Shen
minjiecheng/InfoGraph
Official code for "InfoGraph: Unsupervised and Semi-supervised Graph-Level Representation Learning via Mutual Information Maximization" (ICLR 2020, spotlight)
minjiecheng/RDE-PPI
:mountain: Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)
minjiecheng/set_transformer
Pytorch implementation of set transformer
minjiecheng/IEConv_proteins
Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures
minjiecheng/MEAN
This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.
minjiecheng/minjiecheng.github.io
AcadHomepage: A Modern and Responsive Academic Personal Homepage
minjiecheng/SiamDiff
Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)
minjiecheng/Specformer
Transformer-based Spectral Graph Neural Networks