mireia-bioinfo
Postdoc in Bioinformatics 👩💻 and Regulatory Genomics 🧬 at @Pasquali-lab. R enthusiast. @rladies Barcelona organizer.
@Pasquali-lab Barcelona
Pinned Repositories
howto-thesis-bookdown
How to survive writting your PhD thesis using R and {bookdown}.
maRge
maRge is a package developed for simplifying motif analysis of genomic regions.
meowmics
R package with several functions for performing fancatstic analyses on epigenomic data.
phdthesis_code
🖥️📚 WorkflowR site containing code and analyses produced throghout my PhD thesis.
pipelineNGS
Pipeline for processing epigenomic NGS data.
plotRegulome
R package for plotting Islet Regulome data.
workshop_bioinfo_ChIPseq
🖥️🧬 Materials for a Bioinformatics Workshop on ChIP-seq analysis, introduction to R and GenomicRanges.
workshop_ggplot2
📈📊 Presentation and materials for a ggplot2 workshop (estimated time: 1h 30min).
UMI4Cats
An R package for analyzing UMI-4C chromatin contact data.
meetup-presentations_barcelona
:ant: R-Ladies Barcelona resources :ant:
mireia-bioinfo's Repositories
mireia-bioinfo/pipelineNGS
Pipeline for processing epigenomic NGS data.
mireia-bioinfo/workshop_ggplot2
📈📊 Presentation and materials for a ggplot2 workshop (estimated time: 1h 30min).
mireia-bioinfo/howto-thesis-bookdown
How to survive writting your PhD thesis using R and {bookdown}.
mireia-bioinfo/maRge
maRge is a package developed for simplifying motif analysis of genomic regions.
mireia-bioinfo/phdthesis_code
🖥️📚 WorkflowR site containing code and analyses produced throghout my PhD thesis.
mireia-bioinfo/meowmics
R package with several functions for performing fancatstic analyses on epigenomic data.
mireia-bioinfo/Single-cell-RNA-seq-data-analysis-2018
Event page: https://www.csc.fi/web/training/-/single-cell-rnaseq-r-2018
mireia-bioinfo/workshop_bioinfo_ChIPseq
🖥️🧬 Materials for a Bioinformatics Workshop on ChIP-seq analysis, introduction to R and GenomicRanges.
mireia-bioinfo/plotRegulome
R package for plotting Islet Regulome data.
mireia-bioinfo/2017-09-27_rladiesBCN-meetup-ggplot2
Slides for the R-Ladies Meetup about ggplot2 (27th September 2017).
mireia-bioinfo/2019-02-13_rladiesBCN_relaunch
Slides and materials for the R-Ladies Barcelona relaunch meetup event
mireia-bioinfo/biorants-blog
Code for my personal blog, created with R package blogdown.
mireia-bioinfo/CRCmapper
CRCmapper: map core regulatory circuitry
mireia-bioinfo/CV
mireia-bioinfo/CYT_hub
test
mireia-bioinfo/enrichPFAM
Gene ontology enrichment analysis using human genes in a PFAM ID vs another organism genome.
mireia-bioinfo/hex-stickers
RStudio hex stickers
mireia-bioinfo/IRB_hub
UCSC Track Hub for the Islet Regulome Browser
mireia-bioinfo/lecture6
mireia-bioinfo/lecture7
mireia-bioinfo/mouseSim
Usinga PFAM ID as input, selects all human genes and returns mouse genes anotated to the same GO terms.
mireia-bioinfo/OncoProstApp
R web-app for expression analysis in prostate cancer.
mireia-bioinfo/PIRB_deployment
mireia-bioinfo/PIRB_shinyApp
Code for the Shiny framework for the Islet Regulome Browser.
mireia-bioinfo/practical7
mireia-bioinfo/practical8
mireia-bioinfo/purrfectTemplates
Collection of Rmarkdown templates for different projects and types of documents.
mireia-bioinfo/seminar4
mireia-bioinfo/tvseries
IMBDb TV series R data package
mireia-bioinfo/xaringan_gh