Pinned Repositories
cPecan
C + python code for pairwise multiple sequence alignment, pulling out this functionality from the Cactus alignment program.
dRNA_capping_analysis
Analysis code for 5' capping-based nanopore direct RNA data (NEB-UCSC collaboration)
marginAlign-tRNA
marginAlign with altered bwa mem params for Nanopore-based direct tRNA sequencing
marginUtils
mba
MinION Base Analysis
nanopore
UCSC Nanopore group's software pipeline for reference-based sequence analysis
protpore
Peptide Nanopore signal analysis
R3N
Recurrent neural network for nanopores
signalAlign
tRNApore
Analysis pipeline for tRNA data
mitenjain's Repositories
mitenjain/nanopore
UCSC Nanopore group's software pipeline for reference-based sequence analysis
mitenjain/signalAlign
mitenjain/protpore
Peptide Nanopore signal analysis
mitenjain/R3N
Recurrent neural network for nanopores
mitenjain/tRNApore
Analysis pipeline for tRNA data
mitenjain/dRNA_capping_analysis
Analysis code for 5' capping-based nanopore direct RNA data (NEB-UCSC collaboration)
mitenjain/marginAlign-tRNA
marginAlign with altered bwa mem params for Nanopore-based direct tRNA sequencing
mitenjain/mba
MinION Base Analysis
mitenjain/cPecan
C + python code for pairwise multiple sequence alignment, pulling out this functionality from the Cactus alignment program.
mitenjain/marginUtils
mitenjain/misc_scripts
mitenjain/NA12878
Data and analysis for NA12878 genome on nanopore
mitenjain/nanopolish
Signal-level algorithms for MinION data
mitenjain/open-data-registry
A registry of publicly available datasets on AWS
mitenjain/reReadPore
reRead HMMs for single-channel nanopore
mitenjain/serviceCourse
mitenjain/sonLib
mitenjain/ssds
Simple data storage system for AWS and GCP
mitenjain/toil-marginAlign