The mba package can be used to analyze HDF5 container format basecalled files. It is specifically tailored for Oxford Nanopore Reads.
###Requirements git python 2.7 pip/virtualenv (see below)
###Installation
To install the code run:
git clone git://github.com/mitenjain/mba.git
cd mba
git pull
git submodule update --init
make
This will build the code.
###Creating a virtual environment to handle python dependencies
mba uses PyPore and yahmm packages, that individualy require a number of python packages. The system python could be used if these dependencies are present. Otherwise, a virtual environment can be created by running the following command in the mba base directory:
virtualenv --no-site-packages --distribute env && source env/bin/activate && pip install -r requirements.txt
Creation of a virtual environment requires that machine has an existing installation of pip and virtualenv.