Pinned Repositories
GLCM2
calculates GLCM, to make it friendly for scripting.
ij_textbook1
textbook for the CMCI course (part 1)
ij_textbook2
CMCI textbook 2, for ImageJ macro course
ImageJMacro_Highlighter
syntax high lighter for ImageJ macro, for vim and Notepad++
MultiStackRegistration
Modified version of MultiStackRegistration, for use from scripts.
NEUBIAS_AnalystSchool2018
NEUBIAS Bioimage Analyst School Documentation
NEUBIAS_AnalystSchool2019
NEUBIAS Bioimage Analyst School 2019
NEUBIAS_AnalystSchool2020
NEUBIAS_Bioimage_Analyst_Course2017
reproducible_bioimage_analysis
miura's Repositories
miura/reproducible_bioimage_analysis
miura/NEUBIAS_AnalystSchool2020
miura/MultiStackRegistration
Modified version of MultiStackRegistration, for use from scripts.
miura/GLCM2
calculates GLCM, to make it friendly for scripting.
miura/CourseUtil
EMBL Image Processing and Analysis Course samples, links and plugins.
miura/ijmacros
ImageJ macros, javascripts and jython codes for image processing and analysis
miura/fiji
Fiji Is Just ImageJ
miura/saiboukougaku
miura/AnalyzeSkeleton
ImageJ/Fiji plugin to analyze 2D and 3D skeleton images
miura/APEER-IJMacro-Example
miura/APEER_IJM_EpidermalCell_Tracking
miura/APEER_IJM_FindMaxima
miura/APEER_IJM_Remove_FalseCellJunctions
miura/APEER_MacroExtension
miura/APEER_Python_2D_Plotter
miura/BioImageAnalysisNotebooks
Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
miura/bise
Biii development repository
miura/content
A metadata commons to store research software metadata
miura/CorrectBleach
miura/ddev-gitpod
A full Drupal dev environment in a browser
miura/drupal-ddevTest
miura/emboBioImage2023_registration
Materials for the advanced image registration section of the "Advanced methods in bioimage analysis" EMBO 2023 course
miura/gitprod-env-test
miura/jikken_igaku2023
miura/list-of-update-sites
The update sites ImageJ knows about automatically
miura/MyFavoriteBIAtool_NEUBIAS_member
Bioimaging data analysis: The favorite imaging analysis tools of Neubias members - editor Kota Miura
miura/testZIDA2
demo repo for the school
miura/TheDigitalCell
Code associated with The Digital Cell
miura/WG12_checklists_for_image_publishing
miura/wrMTrck
Git collaboration site for wrMTrck - a plugin for ImageJ that allows tracking of several animals such as C. elegans in parallel. In addition, it allows to quantify swimming/thrashing/body-bends of C. elegans