mkanai

Research Fellow at Massachusetts General Hospital & Broad Institute of MIT and Harvard

Massachusetts General HospitalCambridge, MA

Pinned Repositories

eas_partitioned_ldscore
Partitioned LD Scores for the EAS population
Language:Python6 2 04
finemapping-insights
Code for Kanai, M. et al. Insights from complex trait fine-mapping across diverse populations. (2021)
Language:R6 2 11
finemapping-pipeline
Language:Python6 2 20
fujiplot
:mount_fuji: Fuji plot—a circos representation of multiple GWAS results— :mount_fuji:
Language:R78 3 819
ggman
R package for plotting a manhattan plot using ggplot2.
Language:R4 2 02
grimon
R package for plotting 3D graphical visualization of multi-omics data.
Language:R22 3 13
ldsc-corrplot-rg
corrplot of LDSC genetic correlation results
Language:R47 3 510
ldsc-network-plot
Network representation of LDSC results
Language:R26 3 03
mr-forestplot
Language:R10 2 05
slalom
SLALOM (suspicious loci analysis of meta-analysis summary statistics)
Language:Python7 4 55

mkanai's Repositories

mkanai/fujiplot
:mount_fuji: Fuji plot—a circos representation of multiple GWAS results— :mount_fuji:
Language:R78 3 819
mkanai/ldsc-corrplot-rg
corrplot of LDSC genetic correlation results
Language:R47 3 510
mkanai/ldsc-network-plot
Network representation of LDSC results
Language:R26 3 03
mkanai/grimon
R package for plotting 3D graphical visualization of multi-omics data.
Language:R22 3 13
mkanai/mr-forestplot
Language:R10 2 05
mkanai/slalom
SLALOM (suspicious loci analysis of meta-analysis summary statistics)
Language:Python7 4 55
mkanai/finemapping-insights
Code for Kanai, M. et al. Insights from complex trait fine-mapping across diverse populations. (2021)
Language:R6 2 11
mkanai/finemapping-pipeline
Language:Python6 2 20
mkanai/locusviz
Yet another locus visualization package in R
Language:R3 2 0
mkanai/pheweb
A tool to build multi-phenotype GWAS browsers
Language:Python2 1 01
mkanai/slalom-paper
Code for Kanai, M. et al. Meta-analysis fine-mapping is often miscalibrated at single-variant resolution. (2022)
Language:Jupyter Notebook2 4 03
mkanai/rgsutil
A simple gsutil wrapper in R
Language:R1 2 0
mkanai/covid19-finemapping
Language:Python2 0
mkanai/cumulus
Cloud-based scalable and efficient single-cell genomics workflows
Language:WDL1 0
mkanai/gnomad_methods
Hail helper functions for gnomAD/MacArthur lab
Language:Python1 0
mkanai/gsMap
mkanai/hail
Scalable genomic data analysis.
Language:Python1 0
mkanai/meta-finemapping-simulation
Language:R3 0
mkanai/mkanai.github.io
Personal website powered by Jekyll.
Language:JavaScript2 01
mkanai/plink-ng
A comprehensive update to the PLINK association analysis toolset, currently focused on speed and memory efficiency improvements. Beta testing of the first release from this codebase (v1.90) is now in progress.
Language:C2 0
mkanai/polyfun
PolyFun (POLYgenic FUNctionally-informed fine-mapping)
Language:Python0 0
mkanai/pops
Language:Python1 0
mkanai/popscle
A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools
Language:C++1 0
mkanai/pyranges
Performant Pythonic GenomicRanges
Language:Python1 0
mkanai/qtl
Language:C++1 0
mkanai/scDRS
Single-cell disease relevance score (scDRS)
mkanai/SCENT
Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
Language:R1 0
mkanai/seurat
R toolkit for single cell genomics
Language:R1 0
mkanai/susieR
R package for "sum of single effects" regression.
Language:R1 0
mkanai/tensorqtl
Ultrafast GPU-enabled QTL mapper
Language:Python1 0