mkatsanto

Pinned Repositories

• bioconda-recipes

  Conda recipes for the bioconda channel.

  Language:Shell1.6k961.9k3.2k

• riboseq-flow

  A Nextflow DSL2 pipeline to perform ribo-seq data analysis and comprehensive quality control.

  Language:R81

• APAeval

  Community effort to evaluate computational methods for the detection and quantification of poly(A) sites and estimating their differential usage across RNA-seq samples

  Language:Python13826814

• Dockerfiles

  Dockerfile repository of the Zavolan Lab

  Language:Perl96212

• RCRUNCH

  Workflow for automated (e)CLIP analysis. From raw fastq to peak calling and motif analysis.

  Language:Python64120

• zarp

  The Zavolab Automated RNA-seq Pipeline

  Language:Python336915

• zarp-cli

  A user-friendly command-line interface for the ZARP RNA-seq analysis workflow

  Language:Python45471

mkatsanto's Repositories