mmollina

ACSPB

Advancing Computing Skills in Plant Breeding - Linkage and QTL mapping in diploid and polyploid species - Lorizzo & Mollinari

B2721_map

This repository hosts codes and analytic procedures for the article "The recombination landscape and multiple QTL mapping in a Solanum tuberosum cv. ‘Atlantic’-derived F1 population" by Pereira et al. (2020)

Cpp_and_R

This repository contains an elementary introduction about C++ and R integration using. Rcpp

MAPpoly

Genetic maps in autopolyploids

mappoly-mp

Research codes for new mappoly version

mappoly2

Genetic Linkage Maps in Autopolyploids v 2.0

mappoly2_vignettes

Vignettes for MAPpoly2

SCRI

Training material for MAPpoly

Talks

Some talks

viewpoly

R package to visualize genetic maps and QTL analysis.

mmollina/MAPpoly

Genetic maps in autopolyploids

mmollina/mappoly2

Genetic Linkage Maps in Autopolyploids v 2.0

mmollina/SCRI

Training material for MAPpoly

mmollina/viewpoly

R package to visualize genetic maps and QTL analysis.

mmollina/mappoly-mp

Research codes for new mappoly version

mmollina/B2721_map

This repository hosts codes and analytic procedures for the article "The recombination landscape and multiple QTL mapping in a Solanum tuberosum cv. ‘Atlantic’-derived F1 population" by Pereira et al. (2020)

mmollina/mappoly2_vignettes

Vignettes for MAPpoly2

mmollina/ACSPB

Advancing Computing Skills in Plant Breeding - Linkage and QTL mapping in diploid and polyploid species - Lorizzo & Mollinari

mmollina/AGHmatrix

An R package to compute relationship matrices for diploid and autotetraploid species

mmollina/alfalfa_mid_density_genotyping_platform

This repository hosts codes and analytic procedures for the article "A public mid-density genotyping platform for Alfalfa (Medicago sativa L.): A fast and robust genotyping platform for alfalfa breeding." by Zhao et al., (2023))

mmollina/Autopolyploid_Linkage

This repository hosts codes and analytic procedures for the article "Linkage analysis and haplotype phasing in experimental autopolyploid populations with high ploidy level using hidden Markov models" by Mollinari and Garcia

mmollina/Cpp_and_R

This repository contains an elementary introduction about C++ and R integration using. Rcpp

mmollina/Talks

Some talks

mmollina/ClusterCall

ClusterCall is an R package for making tetraploid genotype calls from SNP array data. This repository was created to facilitate the instalation of ClusterCall. This package was developed by Jeff Endelman Group and if you use the software, please cite [https://doi.org/10.1007/s00122-016-2845-5]

mmollina/diaQTL

QTL analysis in diallel populations

mmollina/ggsci

Scientific journal and sci-fi themed color palettes for ggplot2

mmollina/highprecHMM

Extension of HMM procedure presented in Mollinari and Garcia to re-estimate maps in multi-parental polyploid populations

mmollina/ldsep

Linkage Disequilibrium Shrinkage Estimation for Polyploids

mmollina/MAPpoly_vignettes

Repository of MAPpoly vignettes

mmollina/minimal-mistakes

:triangular_ruler: Jekyll theme for building a personal site, blog, project documentation, or portfolio.

mmollina/MM_info

mmollina/onemap

Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and backcrosses

mmollina/polyBreedR

Using genome-wide markers for polyploid breeding

mmollina/RABBIT

A Mathematica pipeline for genetic analysis in multiparental populations

mmollina/shiny-examples

mmollina/sweetpotato_mid_density_genotyping_platform

This repository hosts codes and analytic procedures for the article [...] by Zhao et al. (2023)

mmollina/Test_mappoly

mmollina/tutorials

Tutorials and examples using MAPPoly

mmollina/updog

Flexible Genotyping of Polyploids using Next Generation Sequencing Data

mmollina/vcfR

Tools to work with variant call format files