mnarayan
ML & Statistical Science | Causal Inference | Metascience | Quantitative Neuroscience | Protein Design | Therapeutic Discovery | Maker of @skggm.
Pasteur's Quadrant
Pinned Repositories
AFQ-Insight
Statistical learning for AFQ results
gfdr
A toolbox of classic and generalized FDR control procedures
ggmClass
A matlab class for ggm estimation
jf2016-skggm
Tutorials to estimate inverse covariance matrices using the skggm package
tutorial-prni-2017
This repository contains iPython notebooks that run on the octave kernel to accompany tutorial and slides presented at PRNI
skggm
Scikit-learn compatible estimation of general graphical models
mnarayan's Repositories
mnarayan/AFQ-Insight
Statistical learning for AFQ results
mnarayan/awesome-surrogates
A correlate does not a surrogate make
mnarayan/cookiecutter-data-science
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.
mnarayan/cookiecutter-shablona
Create cookiecutters from the uwescience/shablona project template
mnarayan/critical-rct
An informal review and synthesis of the different perspectives that all criticize RCTs or "evidence-based-X" in some way.
mnarayan/dPCA
An implementation of demixed Principal Component Analysis (a supervised linear dimensionality reduction technique)
mnarayan/gfdr
A toolbox of classic and generalized FDR control procedures
mnarayan/minimal-mistakes
:triangular_ruler: Jekyll theme for building a personal site, blog, project documentation, or portfolio.
mnarayan/modwt
An efficient modwt wavelets package. This isn't the usual discrete wavelet transform found in, for example, the gsl but an extended set of algorithms designed to overcome some problems with the usual discrete wavelet transform.
mnarayan/ggmClass
A matlab class for ggm estimation
mnarayan/netsci-stability
mnarayan/cookiecutter-mopackage
A cookiecutter project template for simple data analysis packages in Matlab/Octave
mnarayan/cookiecutter-remarkjs
Cookiecutter template for presentations using remark.js
mnarayan/cookiecutter-reproducible-science
boilerplate for reproducible and transparent science
mnarayan/cpac-utils
Utility functions to fetch and organize preprocessed fMRI timeseries
mnarayan/ddplot
Depth vs. Depth Plots
mnarayan/emprank
Empirical Ranking
mnarayan/ForBES
Generic and efficient MATLAB solver for nonsmooth optimization problems
mnarayan/gramm
Gramm is a complete data visualization toolbox for Matlab. It provides an easy to use and high-level interface to produce publication-quality plots of complex data with varied statistical visualizations. Gramm is inspired by R's ggplot2 library.
mnarayan/hugo-paper-now
writing scientific article with hugo (port of PeerJ/paper-now)
mnarayan/matlab-cliquer
A MATLAB interface to the C program Cliquer: quickly find cliques in graphs.
mnarayan/pyclime
Python wrapper for CLIME estimators
mnarayan/pyquic
Python wrapper for QUIC
mnarayan/quarter-baked
mnarayan/rankdist
A python package for statistical inference and comparisons of rankings
mnarayan/reading
Brief summaries of scientific papers I've read indexed via Github Issues
mnarayan/ReScience-submission
ReScience submission repository
mnarayan/rs_signal_extract
BIDS App for resting state signal extraction using nilearn.
mnarayan/singularity-mriqc
Singularity specification for MRIQC
mnarayan/story
Beautiful responsive Hugo blog theme focused on simplicity and elegance, with many extra features including presentations, math typesetting, music notation, and search.