Pinned Repositories
AF2_benchmark
Allocator-RNA
alphaflow
AlphaFold Meets Flow Matching for Generating Protein Ensembles
alphafold
Open source code for AlphaFold.
AMAS
Calculate summary statistics and manipulate multiple sequence alignments
archs4py
Python package to load and query ARCHS4 data
kaggle-api
Official Kaggle API
openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
RLDOCK
warp-ctc
Fast parallel CTC.
modelturnedgeek's Repositories
modelturnedgeek/warp-ctc
Fast parallel CTC.
modelturnedgeek/arxiv-vanity
Renders papers from arXiv as responsive web pages so you don't have to squint at a PDF.
modelturnedgeek/BARTSmiles
BARTSmiles, generative masked language model for molecular representations
modelturnedgeek/kaggle-api
Official Kaggle API
modelturnedgeek/chatbot-application-in-react
ChatBot Application Made with Node.js, React, OpenAI, and ChatGPT
modelturnedgeek/ddpm-ipa-protein-generation
Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequence Generation with Equivariant Denoising Diffusion Probabilistic Models"
modelturnedgeek/deepchain-apps
A library for deploying App on deepchain.bio
modelturnedgeek/DeepEvolve
Rapid hyperparameter discovery for neural nets using genetic algorithms
modelturnedgeek/invariant-point-attention
Implementation of Invariant Point Attention, used for coordinate refinement in the structure module of Alphafold2, as a standalone Pytorch module
modelturnedgeek/Machine-Learning-Engineering-with-Python
Machine Learning Engineering with Python
modelturnedgeek/OmegaFold
OmegaFold Release Code
modelturnedgeek/opendata4covid19
Korean COVID-19 data extraction
modelturnedgeek/protGPT2
modelturnedgeek/RNA-FM
RNA foundation model
modelturnedgeek/RNA2Dviz