Pinned Repositories
AF2_benchmark
Allocator-RNA
alphaflow
AlphaFold Meets Flow Matching for Generating Protein Ensembles
alphafold
Open source code for AlphaFold.
alphafold3
AlphaFold 3 inference pipeline.
AMAS
Calculate summary statistics and manipulate multiple sequence alignments
kaggle-api
Official Kaggle API
openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
RLDOCK
warp-ctc
Fast parallel CTC.
modelturnedgeek's Repositories
modelturnedgeek/AF2_benchmark
modelturnedgeek/alphaflow
AlphaFold Meets Flow Matching for Generating Protein Ensembles
modelturnedgeek/alphafold3
AlphaFold 3 inference pipeline.
modelturnedgeek/AMAS
Calculate summary statistics and manipulate multiple sequence alignments
modelturnedgeek/ARTEMIS
modelturnedgeek/bio-diffusion
A PyTorch hub of denoising diffusion probabilistic models designed to generate novel biological data
modelturnedgeek/Cfold
Structure prediction of alternative protein conformations
modelturnedgeek/chai-lab
Chai-1, SOTA model for biomolecular structure prediction
modelturnedgeek/geometric-rna-design
gRNAde: Geometric Deep Learning for 3D RNA inverse design
modelturnedgeek/kotaemon
An open-source RAG-based tool for chatting with your documents.
modelturnedgeek/lorax
Multi-LoRA inference server that scales to 1000s of fine-tuned LLMs
modelturnedgeek/matmulfreellm
Implementation for MatMul-free LM.
modelturnedgeek/MatX
An efficient C++17 GPU numerical computing library with Python-like syntax
modelturnedgeek/mdgen
modelturnedgeek/MedSAM
Segment Anything in Medical Images
modelturnedgeek/micrograd
A tiny scalar-valued autograd engine and a neural net library on top of it with PyTorch-like API
modelturnedgeek/modelturnedgeek.github.co
modelturnedgeek/modelturnedgeek.github.io
modelturnedgeek/multipass
Multipass orchestrates virtual Ubuntu instances
modelturnedgeek/mxfold2
MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration
modelturnedgeek/Orthrus
Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifically designed for long-sequence data, such as RNA.
modelturnedgeek/papers-for-molecular-design-using-DL
List of molecular design using Generative AI and Deep Learning
modelturnedgeek/Protenix
A trainable PyTorch reproduction of AlphaFold 3.
modelturnedgeek/RAJA
RAJA Performance Portability Layer (C++)
modelturnedgeek/RiboDiffusion
Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models
modelturnedgeek/rna-llm-comparison
repository that holds the code to build a secondary structure RNA predictor model based on LLM representations.
modelturnedgeek/RNADiffFold
modelturnedgeek/rnaflow
RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching
modelturnedgeek/shap
A game theoretic approach to explain the output of any machine learning model.
modelturnedgeek/stablediffusion
High-Resolution Image Synthesis with Latent Diffusion Models