Monti Lab

Pinned Repositories

bands
Simple interactive chromosome maps written in R
Language:R7 4 03
BS831
Course Materials for Genomics Data Mining
Language:HTML20 3 129
CaDrA
Candidate Drivers Analysis: Multi-Omic Search for Candidate Drivers of Functional Signatures
Language:R24 8 441
hypeR
An R Package for Geneset Enrichment Workflows
Language:R75 7 4711
iEDGE
integrative analysis of (epi-)DNA and gene expression data for the identification of candidate cancer drivers
Language:R6 6 251
K2Taxonomer
A tool for the multi-resolution characterization of molecular taxonomies in bulk and single-cell omics data
Language:R4 4 61
nf-gwas-pipeline
A Nextflow Genome-Wide Association Study (GWAS) Pipeline
Language:R30 4 318
pipeliner
A flexible Nextflow-based framework for the definition of sequencing data processing pipelines
Language:Nextflow44 9 5114
ppi-context
Contextualization of protein-protein interaction databases by cell line
Language:Python4 3 30
shine
Structure Learning for Hierarchical Networks
Language:R4 4 02

Monti Lab's Repositories

montilab/hypeR
An R Package for Geneset Enrichment Workflows
Language:R75 7 4711
montilab/nf-gwas-pipeline
A Nextflow Genome-Wide Association Study (GWAS) Pipeline
Language:R30 4 318
montilab/CaDrA
Candidate Drivers Analysis: Multi-Omic Search for Candidate Drivers of Functional Signatures
Language:R24 8 441
montilab/BS831
Course Materials for Genomics Data Mining
Language:HTML20 3 129
montilab/bands
Simple interactive chromosome maps written in R
Language:R7 4 03
montilab/K2Taxonomer
A tool for the multi-resolution characterization of molecular taxonomies in bulk and single-cell omics data
Language:R4 4 61
montilab/ppi-context
Contextualization of protein-protein interaction databases by cell line
Language:Python4 3 30
montilab/shine
Structure Learning for Hierarchical Networks
Language:R4 4 02
montilab/OmicSignature
Language:R3 3 100
montilab/pipeliner-2
Pipeliner upgraded for Nextflow DSL2 modules
Language:Nextflow3 3 21
montilab/ConAn
Resampling-Based Differential Network Connectivity Analysis
Language:R2 5 94
montilab/SigRepoR
Language:R2 3 160
montilab/Xposome
Chemical Screenings using high-throughput transcriptomics assays
Language:R2 7 132
montilab/bieulergy
Interactive analysis of multi-omics regulatory networks
Language:R1 2 30
montilab/evalGSVAsig
Evaluate genes driving signature
Language:R1 2 21
montilab/knnmi
k-nearest neighbor mutual information estimator
Language:C++1 3 100
montilab/ProteomicsSignaturesCentenarians
Analysis scripts associated to Sebastiani et al., Aging Cell 20(2):e13290, 2021
Language:R1 4 01
montilab/shine-nf
A Collection of Nextflow Modules for Bayesian Structure Learning
Language:R1 3 00
montilab/yQTLpipeline
Language:R1 2 30
montilab/Adipogen2020
Language:R3 0
montilab/CaDrA.shiny
A web interface for interacting with the R package CaDrA
Language:HTML2 21
montilab/carcinogenome
Language:R3 01
montilab/hypeR-db
A hypeR repository for relational and flat genesets
3 2
montilab/hypeR-docs
Documentation for hypeR
3 0
montilab/hypeR-modules
Integration of hypeR modules in Shiny applications
Language:R3 0
montilab/hypeR-next
Network enrichment through random walks
Language:R3 11
montilab/hypeR-shiny
A web interface for interacting with the R package hypeR
Language:R3 0
montilab/omics-network
An R6 data representation of biological networks and accessory omics data
Language:R3 0
montilab/pml_analysis
A code repo for the PML project.
Language:HTML2 01
montilab/rpkgs
A skeleton for R packages + Docker / Pkgdown / Pages aimed for Bioconductor
Language:R3 02