Issues
- 0
make iEDGE public
#25 opened by lia978 - 1
- 0
- 0
Biobase dependency issue
#10 opened by lia978 - 0
suppress require package messages
#18 opened by lia978 - 0
- 0
add vignette(s)
#24 opened by tetomonti - 0
bipartite screen: choice of pathway fdr
#23 opened by tetomonti - 0
sort pathway enrichment in bipartite by fdr
#19 opened by lia978 - 2
- 1
Implement resume capabilities.
#17 opened by tetomonti - 0
remove pathway signatures from package, make gmt file required parameter for enrichment analysis
#15 opened by lia978 - 0
- 0
- 0
- 0
fold change cutoff and boxplot toggling
#11 opened by lia978 - 0
default pathway enrichment should be hallmarks
#12 opened by lia978 - 0
geneset specification
#14 opened by tetomonti - 1
some trans sig tables are too much to display for bipartite, perhaps filter to top ~500 trans genes to display, keep all pathway enrichments
#7 opened by lia978 - 0
- 1
- 1
Cis analysis: include total count
#2 opened by tetomonti - 0
rearrange columns in cis and trans tables to have informative statistics appear first
#6 opened by lia978 - 1
Summary statistics should be un-logged
#4 opened by tetomonti - 0
give Vinay access to iEDGE
#1 opened by lia978