mooreryan

Bioinformatics data scientist PhD, viral ecologist, & basketball nerd

University of DelawareNewark, DE

Pinned Repositories

divnet-rs
A fast implementation of DivNet
Language:Rust4 2 120
gleam_fmt
Type-safe (string) formatting for Gleam
Language:Gleam7 1 00
gleam_qcheck
QuickCheck-inspired property testing with integrated shrinking for Gleam
Language:Gleam16 1 23
InteinFinder
InteinFinder: automated intein detection from large protein datasets
Language:OCaml2 2 90
iroki
Super snazzy online phylogenetic tree viewer with automatic customization using simple, tab-separated text files.
Language:HTML29 2 1061
iroki_cli
NOTE: The iroki command line tool is no longer maintained. Please see: https://github.com/mooreryan/iroki
Language:Ruby9 2 240
markdown-dnd-images
Drag and drop images directly into markdown-mode emacs buffer
Language:Emacs Lisp23 5 04
ocaml_python_bindgen
Generate Python bindings via pyml from OCaml value specifications
Language:OCaml30 3 102
pasv
PASV -- Protein active site validation
Language:OCaml5 2 251
valgrind_docker
Valgrind in Docker
Language:Makefile8 2 11

mooreryan's Repositories

mooreryan/clj-parse-fasta
Parse fasta files in Clojure
Language:Clojure3 2 0
mooreryan/midpoint-root
Simple ETE script for midpoint rooting trees
Language:Python3 2 0
mooreryan/cljs_reagent_react_vis_blog_materials
Language:Clojure2 2 0
mooreryan/aoh_cv_website
AOH CV Website
Language:SCSS1 2 0
mooreryan/ascii_plots
Make snazzy plots in your terminal!
Language:Rust1 2 0
mooreryan/bio_illumina_mmgs
Docker image for analyzing Illumina metagenomes
Language:Dockerfile1 2 0
mooreryan/coda
Fast compositional data analysis
Language:C++1 2 0
mooreryan/derep
Language:Clojure1 2 0
mooreryan/docker_images
The Grand Docker Images Master Repo!!!
Language:Dockerfile1 2 0
mooreryan/mmseqs_iterator
Language:Ruby1 2 1
mooreryan/rhode_island_16s
Rhode Island 16S stuff
Language:R1 1 0
mooreryan/bio_ballyhoo
ballyhoo (n.): bombastic or pretentious nonsense
Language:Rust2 0
mooreryan/bio_docker
Some Docker images that I often use.
Language:Dockerfile2 0
mooreryan/blosum_ruby
BLOSOM matrices in Ruby
Language:Ruby2 0
mooreryan/cdd_to_gff3
Convert CDD batch search results to GFF3 format.
Language:Rust2 0
mooreryan/cli_apps
Helpful command line apps for dealing with text files and other sweet stuff!
Language:C2 0
mooreryan/Covid19Dashboard
Track and compare COVID-19 confirmed cases across US counties.
Language:JavaScript2 0
mooreryan/cv_webpage
My personal webpage
Language:SCSS2 0
mooreryan/geneious-nexus
Combine Newick trees and alignment fasta files for viewing in Geneious
Language:Rust2 0
mooreryan/packages
Javascript libraries packaged up with Google Closure externs
Language:JavaScript1 0
mooreryan/parse-gb-xml
Parse GenBank Genome XML files!
Language:Rust2 0
mooreryan/pasv_lib
Library code for PASV
Language:Ruby2 0
mooreryan/polyClustR
polyClustR: A pipeline to reconcile clustering solutions
Language:R1 0
mooreryan/r_dev_base
Base Docker image for R development
Language:Dockerfile2 0
mooreryan/r_dev_divnet
Docker image for DivNet development
Language:Dockerfile2 0
mooreryan/r_dev_docker
Docker images for developing R packages
Language:Shell2 0
mooreryan/rescript-react-project-template
ReScript + React project template
Language:HTML2 01
mooreryan/rya
Some silly stuff here!
Language:Ruby2 0
mooreryan/seanies_similarity
Calculate Seanie's Similarity metric for each pairwise sequence alignment!
Language:C2 1
mooreryan/shell_notebook
Sweet, and super low-tech shell notebooks!
Language:Ruby2 0