mooreryan
Bioinformatics data scientist PhD, viral ecologist, & basketball nerd
University of DelawareNewark, DE
Pinned Repositories
divnet-rs
A fast implementation of DivNet
gleam_fmt
Type-safe (string) formatting for Gleam
gleam_qcheck
QuickCheck-inspired property testing with integrated shrinking for Gleam
InteinFinder
InteinFinder: automated intein detection from large protein datasets
iroki
Super snazzy online phylogenetic tree viewer with automatic customization using simple, tab-separated text files.
iroki_cli
NOTE: The iroki command line tool is no longer maintained. Please see: https://github.com/mooreryan/iroki
markdown-dnd-images
Drag and drop images directly into markdown-mode emacs buffer
ocaml_python_bindgen
Generate Python bindings via pyml from OCaml value specifications
pasv
PASV -- Protein active site validation
valgrind_docker
Valgrind in Docker
mooreryan's Repositories
mooreryan/aai
Multi-genome amino acid similarity pipeline
mooreryan/ZetaHunter
Reproducible taxonomic classification for Zetaproteobacteria and other poorly resolved taxa.
mooreryan/bin_coverage
Coverage plots for bins
mooreryan/bio_illumina_mmgs
Docker image for analyzing Illumina metagenomes
mooreryan/mgs_bias_app
Demonstration of MGS bias and its effect on community structure
mooreryan/mmseqs_iterator
mooreryan/rhode_island_16s
Rhode Island 16S stuff
mooreryan/anvio
An analysis and visualization platform for 'omics data
mooreryan/awesome-c
Continuing the development of awesome-c list on GitHub
mooreryan/breakaway
Species richness with high diversity
mooreryan/build_essentials_docker
Basic Docker image providing some useful stuff for C/C++ and Ruby development
mooreryan/coutinho_assembly
Run Coutinho's epic assembly pipeline!
mooreryan/d3_clojurescript
Some examples of D3 in ClojureScript
mooreryan/d3_scatter_plots
Let's have some fun with d3!
mooreryan/duplicates
Remove a variety of duplicates from sequences.
mooreryan/filter_454
Filter 454 reads as in: https://doi.org/10.1371/journal.pone.0057355
mooreryan/fresh_balloon
delicate glimmer | ephemeral balance | apple pie
mooreryan/gplots
My personal fork of gplots.
mooreryan/matr
mooreryan/ncbi_taxonomy_lookup
mooreryan/pasv_web
mooreryan/r_dev_divnet
Docker image for DivNet development
mooreryan/r_dev_docker
Docker images for developing R packages
mooreryan/rotating_axis_labels_in_r
Figure generation for blog post on rotating R labels
mooreryan/rya_c
C library with some snazzy functions!
mooreryan/sample_seqs
Sample seqs randomly (and FAST). Single, paired, and any combination thereof.
mooreryan/seanies_similarity
Calculate Seanie's Similarity metric for each pairwise sequence alignment!
mooreryan/stec_cattle_microbiome_16s
mooreryan/systemu
univeral capture of stdout and stderr and handling of child process pid for windows, *nix, etc.
mooreryan/TestRepo