moqri's Stars
keras-team/keras
Deep Learning for humans
lmcinnes/umap
Uniform Manifold Approximation and Projection
anishathalye/neural-style
Neural style in TensorFlow! 🎨
cs230-stanford/cs230-code-examples
Code examples in pyTorch and Tensorflow for CS230
scverse/scanpy
Single-cell analysis in Python. Scales to >1M cells.
theislab/single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
scverse/anndata
Annotated data.
rstudio/bookdown-demo
A minimal book example using bookdown
calico/basenji
Sequential regulatory activity predictions with deep convolutional neural networks.
cole-trapnell-lab/monocle3
theislab/scgen
Single cell perturbation prediction
abidlabs/deep-learning-genomics-primer
Contains files for the deep learning in genomics primer.
davek44/Basset
Convolutional neural network analysis for predicting DNA sequence activity.
theislab/dca
Deep count autoencoder for denoising scRNA-seq data
Oshlack/splatter
Simple simulation of single-cell RNA sequencing data
dpeerlab/Palantir
Single cell trajectory detection
theislab/diffxpy
Differential expression analysis for single-cell RNA-seq data.
czbiohub-sf/tabula-muris
Code and annotations for the Tabula Muris single-cell transcriptomic dataset.
tabdelaal/scRNAseq_Benchmark
Bench-marking classification tools for scRNA-seq data
jmschrei/avocado
Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputation of epigenomic experiments that have not yet been performed.
maximilianh/cellBrowser
main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org
ttgump/scDeepCluster
scDeepCluster for Single Cell RNA-seq data
nsalomonis/altanalyze
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
GreenleafLab/MPAL-Single-Cell-2019
Publication Page for MPAL Paper 2019
calico/scnym
Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
aertslab/SCope
Fast visualization tool for large-scale and high dimensional single-cell data
broadinstitute/single_cell_portal_core
Rails/Docker application for the Broad Institute's single cell RNA-seq data portal
TranslationalBioinformaticsUnit/singlecelldb
An actionable database of publicly available single-cell RNA-seq data
mafeiyang/ACTINN
klarman-cell-observatory/scSVA
Single-cell Scalable Visualization and Analytics