Pinned Repositories
check-directory-permissions
Exercises the permissions that production directories should have on the cluster (particularly run folders)
file-provenance-report-reformatter
Connects to SeqWare file provenance report (http://seqware.io) and reformats it for specific purposes
forty-jekyll-theme
fpr-analysis
Perform some analysis on the contents of the file provenance report
grep-rc
Searches a tab-delimited file with a regex and selects the rows AND columns that match the query
language-randomizer
Create random words for invented languages according to grammar rules
machine-setup
For when I need to set up new machines for a variety of reasons
markdown-resume
Takes Markdown formatted files and compiles them into a resume
one-workflow-many-ways
Implementing bamqc over and over again
project-sandbox
Sandbox for personal development projects
morgantaschuk's Repositories
morgantaschuk/one-workflow-many-ways
Implementing bamqc over and over again
morgantaschuk/fpr-analysis
Perform some analysis on the contents of the file provenance report
morgantaschuk/markdown-resume
Takes Markdown formatted files and compiles them into a resume
morgantaschuk/project-sandbox
Sandbox for personal development projects
morgantaschuk/bcc2020.github.io
Website for #BCC2020
morgantaschuk/check-directory-permissions
Exercises the permissions that production directories should have on the cluster (particularly run folders)
morgantaschuk/file-provenance-report-reformatter
Connects to SeqWare file provenance report (http://seqware.io) and reformats it for specific purposes
morgantaschuk/forty-jekyll-theme
morgantaschuk/grep-rc
Searches a tab-delimited file with a regex and selects the rows AND columns that match the query
morgantaschuk/idep
Integrated Differential Expression and Pathway analysis
morgantaschuk/language-randomizer
Create random words for invented languages according to grammar rules
morgantaschuk/machine-setup
For when I need to set up new machines for a variety of reasons
morgantaschuk/mavevis
visualization for MaveDB
morgantaschuk/miso-lims
MISO: An open-source LIMS for NGS sequencing centres
morgantaschuk/morgantaschuk.github.io
Source and hosting for morgantaschuk.com
morgantaschuk/niassa-docs
Host the website for Niassa
morgantaschuk/seqware-meta-reporting
A few scripts that crawl through OICR's seqware_meta_db and report pertinent statistics
morgantaschuk/vcf-filter
Remove variants from a VCF file that overlap with one another for testing purposes.
morgantaschuk/vizoozie
Visualization tool for the Oozie workflows.