Pinned Repositories
Publication_Resources
.github
BulkRNAseqAnalysis_from_countMatrix
R Markdown script to perform bioinformatic analysis of RNA-seq raw count matrices, including DE-testing via DESeq2 and gene set enrichment analysis (GSEA).
Cassiopeia_LFQ
R script to perform standard analysis steps for label-free proteomics data
InterferenceModeling_in_MultiplexProteomics
Workflow to perform interference modeling and interference correction for MS2-based multiplex proteomics data
Miscellaneous_Proteomics
Various functions and scripts etc. for quantitative proteomics (LFQ and multiplex proteomics) data analysis
Simple_MetaStudy
R script to perform simple meta analysis on multiple individually curated bioinformatics datasets
SiteToProteinNormalization_in_MultiplexProteomics
Workflow to perform unbiased site-to-protein normalization in multiplex proteomics by accounting for ratio compression effects due to ion interference
moritzmadern's Repositories
moritzmadern/Cassiopeia_LFQ
R script to perform standard analysis steps for label-free proteomics data
moritzmadern/BulkRNAseqAnalysis_from_countMatrix
R Markdown script to perform bioinformatic analysis of RNA-seq raw count matrices, including DE-testing via DESeq2 and gene set enrichment analysis (GSEA).
moritzmadern/InterferenceModeling_in_MultiplexProteomics
Workflow to perform interference modeling and interference correction for MS2-based multiplex proteomics data
moritzmadern/Miscellaneous_Proteomics
Various functions and scripts etc. for quantitative proteomics (LFQ and multiplex proteomics) data analysis
moritzmadern/Simple_MetaStudy
R script to perform simple meta analysis on multiple individually curated bioinformatics datasets
moritzmadern/SiteToProteinNormalization_in_MultiplexProteomics
Workflow to perform unbiased site-to-protein normalization in multiplex proteomics by accounting for ratio compression effects due to ion interference