morris-lab/CellOracle

Error in tfi.scan motif scan output - missing factors

Closed this issue · 2 comments

Mesi395 commented

Hello,

When running the tfi.scan function with zebrafish motifs from the CisBP database, I get an output table with empty columns for the TFs associated to each motif.

motifs = ma.load_motifs("CisBP_ver2_Danio_rerio.pfm")

tfi.scan(fpr=0.02, n_cpus=45, motifs=motifs, verbose=True)

tfi.scanned_df.head()

image

Can you please advise how to resolve this issue?

Thank you!

KenjiKamimoto-ac commented

Hi @Mesi395

Sorry, this is a bug in old version. Can you please reinstall CellOracle and try again?
For more information, please see #102

Let me close the issue as I think it is solved. But please re-open the issue if you still have the error on the current version of CellOracle.

Mesi395 commented
  • 😄1