Add compatibility for BAM files produced from zUMIs

Question

Add compatibility for BAM files produced from zUMIs

Closed this issue 3 years ago · 1 comments

Just wanted to ask if compatibility for BAM files produced from the zUMI pipeline could be added. Cell barcodes are tagged "BC" and UMIs are tagged "UB".

Thanks!

Answer 1 · 2021-10-07T18:15:24.000Z

Hello,

Thanks for using CellTagR! I added some code to enable zumi pipeline. You can set the technique parameter in the CellTagExtraction function to be zumi. Let us know if it works out!

Best,
Wenjun