morris-lab/CellTagR

SRA data problem

Opened this issue · 1 comments

HI~
Recently, I came across an issue when downloading the source data to do some deeper analysis about tracing data. The problem is: e.g. SRR7347028 seems only contain one file not common 3 files when "fastq-dump --split-3 SRR7347028.sra" (resulted only SRR7347028.fastq.gz) or "fastq-dump --split-files SRR7347028.sra" (resulted only SRR7347028_1.fastq.gz).
Screenshot 2023-04-27 at 20 55 08

And this sample was described as follows:

Screenshot 2023-04-27 at 20 51 06

Also I had found the Speicific Notice about 3'-end sequencing in your protocol:
Screenshot 2023-04-27 at 20 53 41

Could you please give me some hints about this issue?

I see. What you have deposited is the bam file.