MoSDeF - the Molecular Simulation Design Framework
MoSDeF builds, atom types, and parametrizes arbitrary chemical systems for molecular simulation in an engine agnostic manner.
Pinned Repositories
forcefield_template
A template repo for disseminating force fields with foyer
foyer
A package for atom-typing as well as applying and disseminating forcefields
gmso
Flexible storage of chemical topology for molecular simulation
mbuild
A hierarchical, component based molecule builder
mbuild_tutorials
A set of tutorials to introduce new users to mBuild
mosdef-workflows
Sample molecular simulation workflows using a MoSDeF and community tools
mosdef_tutorials
A set of tutorials to introduce new users to the MoSDeF (Molecular Simulation Design Framework) toolkit
msibi
A package for managing pair-potential derivation using MultiState Iterative Boltzmann Inversion (MS-IBI)
nanoparticle_optimization
NanoOpt: Deriving potentials for coarse-grained nanoparticles via potential-matching
reproducibility_study
Repo for data collection, discussion, etc for a MoSDeF reproducibility study.
MoSDeF - the Molecular Simulation Design Framework's Repositories
mosdef-hub/mbuild
A hierarchical, component based molecule builder
mosdef-hub/foyer
A package for atom-typing as well as applying and disseminating forcefields
mosdef-hub/gmso
Flexible storage of chemical topology for molecular simulation
mosdef-hub/mosdef_tutorials
A set of tutorials to introduce new users to the MoSDeF (Molecular Simulation Design Framework) toolkit
mosdef-hub/mosdef-workflows
Sample molecular simulation workflows using a MoSDeF and community tools
mosdef-hub/msibi
A package for managing pair-potential derivation using MultiState Iterative Boltzmann Inversion (MS-IBI)
mosdef-hub/mbuild_tutorials
A set of tutorials to introduce new users to mBuild
mosdef-hub/nanoparticle_optimization
NanoOpt: Deriving potentials for coarse-grained nanoparticles via potential-matching
mosdef-hub/forcefield_template
A template repo for disseminating force fields with foyer
mosdef-hub/reproducibility_study
Repo for data collection, discussion, etc for a MoSDeF reproducibility study.
mosdef-hub/mosdef_slitpore
A variety of water and carbon slit-pore simulations
mosdef-hub/forcefield_perfluoroethers
foyer force field for perfluoroethers
mosdef-hub/foyer_tutorials
A set of tutorials to introduce new users to Foyer
mosdef-hub/mbuild-examples
mBuild examples
mosdef-hub/FOMMS-MoSDeF-Workshop
mosdef-hub/forcefield-utilities
MISC Utilities for MoSDeF Forcefields conversion
mosdef-hub/metamds
metamds is currently read-only; see signac.io for a recommended data and workflow manager
mosdef-hub/molbox
mosdef-hub/mosdef-hub.github.io
Umbrella Website for MoSDeF
mosdef-hub/MoSDeF-workshop
Collection of tutorials and example workflows for MoSDeF workshop at FOMMS 2022
mosdef-hub/gmso-examples
Demonstrating GMSO as a backend for preparing molecular simulation
mosdef-hub/mbuild_binder
mosdef-hub/CECAM-MoSDeF-Workshop
Materials for the MoSDeF tutorial at the 2023 CECAM workshop
mosdef-hub/gmso_showcase
Interactive demo/tutorial of current GMSO features and design decisions.
mosdef-hub/mdsblocks
mosdef-hub/mosdef-slideshow
Interactive showcase of the MoSDeF framework features.
mosdef-hub/simgen