motroy

Pinned Repositories

blog
https://motroy.github.io/blog
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bohra
A pipeline for bioinformatics analysis of bacterial genomes
Language:Python0 0 00
drax
A pipeline for Detecting Resistome Associated taXa
Language:Groovy0 0 00
GrapeTree
GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click the first link to launch: https://achtman-lab.github.io/GrapeTree/MSTree_holder.html
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Managing_batch_effects
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MIDAS
An integrated pipeline for estimating strain-level genomic variation from metagenomic data
Language:Python0 1 00
motroy.github.io
https://motroy.github.io - website for sorting methods
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notebooks
Jupyter and R Notebooks
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online-cv
A minimal Jekyll Theme to host your resume (CV) from http://webjeda.com/online-cv/
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PlasmidCoverage
Script to obtain plasmid id from WGS data using bowtie2 to map
Language:Python0 0 00

motroy's Repositories

motroy/blog
https://motroy.github.io/blog
Language:HTML0 1 00
motroy/bohra
A pipeline for bioinformatics analysis of bacterial genomes
Language:Python0 0 00
motroy/drax
A pipeline for Detecting Resistome Associated taXa
Language:Groovy0 0 00
motroy/GrapeTree
GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click the first link to launch: https://achtman-lab.github.io/GrapeTree/MSTree_holder.html
Language:JavaScript0 0 00
motroy/Managing_batch_effects
Language:R0 1 00
motroy/MIDAS
An integrated pipeline for estimating strain-level genomic variation from metagenomic data
Language:Python0 1 00
motroy/motroy.github.io
https://motroy.github.io - website for sorting methods
Language:HTML0 0 00
motroy/notebooks
Jupyter and R Notebooks
Language:Jupyter Notebook0 0 00
motroy/online-cv
A minimal Jekyll Theme to host your resume (CV) from http://webjeda.com/online-cv/
Language:CSS0 0 00
motroy/PlasmidCoverage
Script to obtain plasmid id from WGS data using bowtie2 to map
Language:Python0 0 00
motroy/qiime2-rstudio-example
Example use of qiime2 and rstudio for 16S gene microbiome analysis
Language:R0 1 00
motroy/referenceseeker
Rapid determination of appropriate reference genomes.
Language:Python0 0
motroy/sandbox-2022
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motroy/sandbox-2023
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motroy/sandbox-2024
sandbox 2024
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motroy/sandbox-202401
sandbox 202401
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motroy/sandbox-202407
sandbox 202407
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motroy/snipit
snipit: summarise snps relative to your reference sequence
Language:Python0 0
motroy/tourmaline
Amplicon sequence processing workflow using QIIME 2 and Snakemake
Language:Python0 0
motroy/WGS-mini-dataset
mini dataset for WGS pipeline testing
Language:Jupyter Notebook1 0