mourisl
Assistant Professor at the Department of Biomedical Data Science at Dartmouth. Interested in designing algorithms and developing bioinformatics methods.
Geisel School of Medicine at Dartmouth College
mourisl's Stars
shenwei356/seqkit2_benchmark
Tessil/robin-map
C++ implementation of a fast hash map and hash set using robin hood hashing
imartayan/CBL
A Rust library providing fully dynamic sets of k-mers with high locality
simingz/QBS-statsgen
jenniferlu717/Bracken
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
xinhe-lab/ctwas
package for the causal TWAS project
voutcn/megahit
Ultra-fast and memory-efficient (meta-)genome assembler
igsr/1000Genomes_data_indexes
The index files for sequence and other data created for the 1000 Genomes project and the International Genome Sample Resource
shenwei356/rust-practice
Some tools in Rust for learning
YS-L/csvlens
Command line csv viewer
attractivechaos/plb2
A programming language benchmark
udlbook/udlbook
Understanding Deep Learning - Simon J.D. Prince
rrwick/Filtlong
quality filtering tool for long reads
ml-explore/mlx
MLX: An array framework for Apple silicon
rvaser/spoa
SIMD partial order alignment tool/library
tymor22/protein-vec
Repository for Protein-Vec, a protein embedding mixture of experts model
fbreitwieser/pavian
🌈 Interactive analysis of metagenomics data
mohsenzakeri/Movi
Fast and cache-efficient full-text pangenome index
smarco/WFA2-lib
WFA-lib: Wavefront alignment algorithm library v2
Daniel-Liu-c0deb0t/simple-saca
Hardware go brrr bounded context suffix array construction algorithm
PacificBiosciences/paraphase
HiFi-based caller for highly similar paralogous genes
ikatyang/emoji-cheat-sheet
A markdown version emoji cheat sheet
ksahlin/isONcorrect
Error correction of ONT transcript reads
jamshed/CaPS-SA
Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays
jasoncoding13/nmf
Robust Non-Negative Matrix Factorization
danmar/cppcheck
static analysis of C/C++ code
rpetit3/fastq-dl
Download FASTQ files from SRA or ENA repositories.
TrinityCTAT/ctat-mutations
Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19
pysam-developers/pysam
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
datacarpentry/wrangling-genomics
Data Wrangling and Processing for Genomics