mousepixels/sanbomics_scripts

Issues

• Salmon index issue

  #25 opened 7 months ago by AndreaGhiroldi
  0

• Error in import_atac function

  #24 opened 7 months ago by EmanAbda
  0

• single_cell_analysis_complete_class.ipynb

  #23 opened 8 months ago by PilanEli
  0

• There is typo in code.

  #20 opened 9 months ago by partrita
  1

• Error :ValueError: Found array with 0 feature(s) (shape=(249101, 0)) while a minimum of 1 is required.

  #22 opened 9 months ago by ruchikabhat
  0

• Differential expression

  #11 opened 2 years ago by victorsanchezarevalo
  6

• Issue convert anndata to seurat object

  #21 opened a year ago by djlisko01
  0

• ERROR in pseudobulk_pyDeseq2.ipynb with pseudo replicates

  #19 opened a year ago by redvoidling
  0

• SoupX tutorial: meta.data nCount_RNA contains information from previous RNA assay

  #18 opened a year ago by KriBaLin
  0

• No fragment file present when extracting gene activity

  #17 opened a year ago by akkku0918
  0

• local variable 'id_length' referenced before assignment

  #15 opened a year ago by xyin0918
  0

• go in R question about baseMean filtering

  #14 opened a year ago by karenbobier
  0

• Assigning mitocondrial genes variable

  #12 opened 2 years ago by mtrebelo
  1

• Problem to load files in Scanpy

  #6 opened 2 years ago by victorsanchezarevalo
  13

• CellBender scRNA-seq tutorial

  #10 opened 2 years ago by giorgiatosoni
  0

• showing selected genenames on the plot

  #9 opened 2 years ago by mars188
  12

• Integration question + consulting work?

  #8 opened 2 years ago by smitapath
  4

• About singler.rmd , any human reference specifized tissue, like liver

  #1 opened 2 years ago by star9926
  2

• single-cell RNA velocity analysis

  #2 opened 2 years ago by dfmontielg
  1

• reproducing from filtered matrix

  #5 opened 2 years ago by giorgiatosoni
  2

• use better `pip install` approach in tutorials

  #7 opened 2 years ago by fomightez
  1

• Location of lung1.h5 file

  #3 opened 2 years ago by slives-lab
  1

• high_quality_volcano_plots.ipynb

  #4 opened 2 years ago by victorsanchezarevalo
  4