Pinned Repositories
AssemblyHubPT
AssemblyHubPT
aws-notes
Some tips / things of notes for myself while I'm learning AWS
docker-notes
hospital-manager
ibex-code-server-extensions-backup
Here contains all the files for the extensions I downloaded for use on code-server on the KAUST IBEX.
markpampuch
my personal website project with my resume and portfolio
new-ibex-project-template
This repository contiains all the necessary files and instructions to initialize a new directory on the KAUST IBEX for a data analysis project.
nextflow-notes
pt-genome-remapping
Here contains all the files and scripts used to perform remapping of Phatr3 annoation data from the GCA_000150955.2 (Diatom Consortium) genome assembly to the GCA_914521175.1 (Telomere-to-telomere) genome assembly of Phaeodactylum tricornutum. Data can be access from the UCSC portal from the following URL:
restriction-enzyme-digest-tool
Tool for performing restriction enzyme digest
mpampuch's Repositories
mpampuch/pt-genome-remapping
Here contains all the files and scripts used to perform remapping of Phatr3 annoation data from the GCA_000150955.2 (Diatom Consortium) genome assembly to the GCA_914521175.1 (Telomere-to-telomere) genome assembly of Phaeodactylum tricornutum. Data can be access from the UCSC portal from the following URL:
mpampuch/markpampuch
my personal website project with my resume and portfolio
mpampuch/new-ibex-project-template
This repository contiains all the necessary files and instructions to initialize a new directory on the KAUST IBEX for a data analysis project.
mpampuch/restriction-enzyme-digest-tool
Tool for performing restriction enzyme digest
mpampuch/AssemblyHubPT
AssemblyHubPT
mpampuch/aws-notes
Some tips / things of notes for myself while I'm learning AWS
mpampuch/docker-notes
mpampuch/hospital-manager
mpampuch/ibex-code-server-extensions-backup
Here contains all the files for the extensions I downloaded for use on code-server on the KAUST IBEX.
mpampuch/nextflow-notes
mpampuch/pytorch-notes
mpampuch/variant-classifier
mpampuch/nf-logs-share
mpampuch/readmapping_fork_with-samtools-depth
Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.