Pinned Repositories
2passtools
Two pass alignment for long reads
yanocomp
Yet another nanopore modification comparison tool
g4netx
simple G-Quadruplex polymorphism prediction using sequence based network analysis
g4predict
Putative G Quadruplex prediction from Fasta file
matplotlib_logo
DNA/RNA/Protein Sequence Logos with matplotlib
regex_classifier
experimental sklearn classifer building regex ensembles using genetic algorithm...
rio-segment
segment a set of rasters using rasterio and skimage
seaborn_sinaplot
A python implementation of the sinaplot using matplotlib and seaborn
veg_seasonality
fruit and vegetable seasonlity chart
mparker2's Repositories
mparker2/seaborn_sinaplot
A python implementation of the sinaplot using matplotlib and seaborn
mparker2/g4netx
simple G-Quadruplex polymorphism prediction using sequence based network analysis
mparker2/matplotlib_logo
DNA/RNA/Protein Sequence Logos with matplotlib
mparker2/regex_classifier
experimental sklearn classifer building regex ensembles using genetic algorithm...
mparker2/veg_seasonality
fruit and vegetable seasonlity chart
mparker2/airpol
mparker2/classify_an_elephant
classifies an elephant with inception v3
mparker2/cydtw
Cython funcs for Dynamic Time Warp
mparker2/ea-utils
Automatically exported from code.google.com/p/ea-utils
mparker2/hypotheticalbattlesbot
Twitter bot which makes made up creatures fight
mparker2/iCLIPlib
Tools for dealing with iCLIP data
mparker2/krugernationalpark
mparker2/lesbirel_et_al_methylation_export
mparker2/mparker2.github.io
personal website built with minimal mistakes jekyll theme
mparker2/mparker_phd_thesis
PhD Thesis
mparker2/nanopolish
Signal-level algorithms for MinION data
mparker2/NanopolishComp
NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files
mparker2/nonogram_qr
Create Nonograms encoding QR codes encoding secrets...
mparker2/pandoc-shortcaption
Adds pandoc filter for short LaTeX captions.
mparker2/pomegranate
Fast, flexible and easy to use probabilistic modelling in Python.
mparker2/prophet
Tool for producing high quality forecasts for time series data that has multiple seasonality with linear or non-linear growth.
mparker2/pychopper
A tool to identify, orient, trim and rescue full length cDNA reads
mparker2/qdre
kill sge jobs with regular expressions and other parameters
mparker2/SUPPA
SUPPA2: Fast quantification of differential splicing
mparker2/syri
Synteny and Rearrangement Identifier
mparker2/tombo
Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.
mparker2/UMI-tools
Tools for handling Unique Molecular Identifiers in NGS data sets
mparker2/UpSetPlot
Draw UpSet plots with Pandas and Matplotlib
mparker2/wotstomata
mparker2/xpore
Detection of differential RNA modifications from direct RNA sequencing