mrmckain
Assistant Professor, Biological Sciences, University of Alabama
University of AlabamaTuscaloosa, AL, USA
Pinned Repositories
annoBTD
Annotation software for Verdant.
Chloroplast-Genome-Assembly
clone_reducer
Clone reducing script used in Estep et al. (2014).
Fast-Plast
Automated de novo assembly of whole chloroplast genomes.
FASTKs
Pipeline for generate Ks plots of transcriptome data.
Genomic_Processing
Herbarium_Genomics
Repository for various scripts and databases used for herbarium genomics.
PhyDS
Phylogenetic iDentification of Subgenomes
PUG
Testing WGD placement along a species tree using gene trees.
RefTrans
Set of scripts that using a reference and GeneWise to translate transcritome data.
mrmckain's Repositories
mrmckain/Fast-Plast
Automated de novo assembly of whole chloroplast genomes.
mrmckain/FASTKs
Pipeline for generate Ks plots of transcriptome data.
mrmckain/PhyDS
Phylogenetic iDentification of Subgenomes
mrmckain/PUG
Testing WGD placement along a species tree using gene trees.
mrmckain/Herbarium_Genomics
Repository for various scripts and databases used for herbarium genomics.
mrmckain/annoBTD
Annotation software for Verdant.
mrmckain/clone_reducer
Clone reducing script used in Estep et al. (2014).
mrmckain/Chloroplast-Genome-Assembly
mrmckain/Genomic_Processing
mrmckain/RefTrans
Set of scripts that using a reference and GeneWise to translate transcritome data.
mrmckain/Secondary_Metabolite_Clustering
Scripts used for identifying gene clusters from target gene families in sequenced and annotated genomes.
mrmckain/AJB_2015_Mimulus_Allopolyploidy
Scripts used for <insert paper description>
mrmckain/Avena_sativa_Chloroplast
mrmckain/Bioinformatics_BSC_473_573
Files for Bioinformatics (BSC 473/573).
mrmckain/Chloroplast-Phylogenomics-Utilities
Scripts for process whole chloroplast genomes for phylogenetic analysis.
mrmckain/CPING
Code in development for the CPING project.
mrmckain/CREU_Summer2021
mrmckain/genome-utilities
Random scripts for genome processing.
mrmckain/Genome_Skimming_Utilities
mrmckain/mapping_pipeline
Mapping pipeline for data generated using Arima-HiC
mrmckain/mrmckain.github.io
Lab Website
mrmckain/PIDS
Phylogenetic Identify of Subgenomes
mrmckain/Quick-Mit
Mitochondrial genome assembly.
mrmckain/REDFreq
Identification of banding size from multiple cut sites.
mrmckain/RGS_GProtein_Evolution
Alignments and trees for Hackenberg et al.
mrmckain/SMACR
Sequence Mapping, Annotation, and Counting for sRNAs. Pipeline for sRNA analysis.
mrmckain/Target_Enrichment
Scripts and protocols for target enrichment.
mrmckain/Teaching
Collection of classroom materials.
mrmckain/Transposons
Repository for scripts related to transposon identification.
mrmckain/Verdant_Utilities
Scripts and protocols in development for Verdant.