Pinned Repositories
3DChromatin_ReplicateQC
Software to compute reproducibility and quality scores for Hi-C data
basenji
Sequential regulatory activity predictions with deep convolutional neural networks.
bioconda-recipes
Conda recipes for the bioconda channel.
bone101
Web-hosted documentation on BeagleBone enhanced with BoneScript and live-running tutorials
Chromatin_3D
class-ibs-796-fall2013-playground
minUniqueKmer
Program for calculating the minimum unique k-mer values, both left- and right-anchored for a set of fasta sequences
misha-package
Git version of Tanaylab misha-package bitbucket repo
T2T_Encode_Analysis
Scripts for recapitulating the Encode reanalysis using the T2T chm13 reference assembly
T2T_MUK_Analysis
T2T Minimum Unique K-mer Analysis
msauria's Repositories
msauria/minUniqueKmer
Program for calculating the minimum unique k-mer values, both left- and right-anchored for a set of fasta sequences
msauria/misha-package
Git version of Tanaylab misha-package bitbucket repo
msauria/T2T_Encode_Analysis
Scripts for recapitulating the Encode reanalysis using the T2T chm13 reference assembly
msauria/T2T_MUK_Analysis
T2T Minimum Unique K-mer Analysis
msauria/3DChromatin_ReplicateQC
Software to compute reproducibility and quality scores for Hi-C data
msauria/basenji
Sequential regulatory activity predictions with deep convolutional neural networks.
msauria/bioconda-recipes
Conda recipes for the bioconda channel.
msauria/bone101
Web-hosted documentation on BeagleBone enhanced with BoneScript and live-running tutorials
msauria/comp_calling
msauria/coursera-test
msauria/galaxy
Data intensive science for everyone.
msauria/genomedisco
Software for comparing contact maps from HiC, CaptureC and other 3D genome data.
msauria/hifive
Tools for handling HiC and 5C data
msauria/higlass-docker
Builds a docker container wrapping higlass-server and higlass-client in nginx
msauria/HiGlass_Galaxy_IE
A HiGlass interactive environment for Galaxy
msauria/HMM_Tree
msauria/HSMM
msauria/IDEAS
Jointly characterizing epigenetic dynamics across multiple cell types
msauria/Interaction_Hub
Database tools for analysis of all HiC data. Period.
msauria/KMC
Fast and frugal disk based k-mer counter
msauria/nuc_dynamics
Particle dynamics and simulated annealing for chromosome structure calculation
msauria/pyBigWig
A python extension for quick access to bigWig and bigBed files
msauria/qbb2020-answers
Answers and annotated notebooks for Quantitative Biology Bootcamp 2020
msauria/qbb2022-answers
msauria/Quasar_Paper
msauria/T2T_Kmer_Analysis
msauria/Tree_HMM
msauria/VISION_ERP_Modeling
Enhancer regulatory prediction modeling on a per-gene basis from the VISION consortium data
msauria/Vision_JointDistance
msauria/xled
🎄Unofficial control for Twinkly - Smart Decoration LED lights.