T2T Centromere K-mer Analysis
These scripts will recapitulate the analysis performed for the k-mer analysis of centromeric annotations using the CHM13v1 reference genome.
Prerequisites:
- Snakemake
- Python3
- Conda
- Git
Running the analysis:
First, adjust values in the snakefile to reflect the appropriate specs for your system.
Second, run the snakefile with the --use-conda flag.
Any questions should be directed to msauria@jhu.edu