Pinned Repositories
traccuracy
Utilities for computing common accuracy metrics on cell tracking challenge solutions with ground truth
deltascope
Python package to quantify biological structure
bebi205
Repo for Caltech's Be/Bi 205 course
Caliban-2024_Schwartz_et_al
deepcell-tf
Deep Learning Library for Single Cell Analysis
deepcell-tracking
Track cells and build cell lineages
kiosk-console
DeepCell Kiosk Distribution for Kubernetes on GKE and AWS
msschwartz21's Repositories
msschwartz21/deltascope
Python package to quantify biological structure
msschwartz21/academic-kickstart
msschwartz21/caltech-tutorial
Material for the Caltech tutorial on deep learning and tensor methods
msschwartz21/cranium_visualization-VA
Plotly visualization to support biological structure quantification
msschwartz21/germband-extension
Efforts to track the rate of extension of the Drosophila germ band
msschwartz21/gitbrachmerge
Practice repository for forking, branching, and merging for bebi103
msschwartz21/Mamut_xml_processing
Code for analyzing cell movement resulting from manual tracking in MaMuT
msschwartz21/msschwartz21.github.io
Personal website for Morgan Schwartz https://msschwartz21.github.io/
msschwartz21/msschwartz21.github.io-academicpages
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
msschwartz21/Notebook_generation
Code for automatically generating ipynb notebooks
msschwartz21/pre-commit-exercise-sandbox
Sandbox to test workflow using jupytext and nbconvert to generate exercies/solution notebooks
msschwartz21/sample_git_repo