NB! Ongoing project scheduled to finish in January 2025.
The GH page rendered from this repo can be accessed here.
In this project, we investigate how the contact maps of High-throughput Chromatin Conformation Capture (Hi-C) can be correlated across species, and how well they correlate with regions that undergo (positive) selection. We focus on the X chromosome.
First, we reproduce some maps from a published paper, then we make the same analysis on some new data, and compare the results.
This project runs in a Linux environment and may do so too on Mac. A conda environment for the project is created like this:
conda env create -f binder/environment.yml
