muntakimrafi
I study gene regulation by applying machine learning to genomics sequence data.
@de-Boer-Lab Vancouver, Canada
Pinned Repositories
random-promoter-dream-challenge-2022
6-PACK
"6-PACK: Category-level 6D Pose Tracker with Anchor-Based Keypoints" code repository
Application-of-DenseNet-in-Camera-Model-Identification-and-Post-processing-Detection
Camera model identification has earned paramount importance in the field of image forensics with an upsurge of digitally altered images which are constantly being shared through websites, media, and social applications. But, the task of identification becomes quite challenging if metadata are absent from the image and/or if the image has been post-processed. In this paper, we present a DenseNet pipeline to solve the problem of identifying the source camera-model of an image. Our approach is to extract patches of 256 x 256 from a labeled image dataset and apply augmentations, i.e., Empirical Mode Decomposition (EMD). We use this extended dataset to train a Neural Network with the DenseNet-201 architecture. We concatenate the output features for 3 different sizes (64x64, 128x128, 256x256) and pass them to a secondary network to make the final prediction. This strategy proves to be very robust for identifying the source camera model, even when the original image is post-processed. Our model has been trained and tested on the Forensic Camera-Model Identification Dataset provided for the IEEE Signal Processing (SP) Cup 2018. During testing we achieved an overall accuracy of 98.37%, which is the current state-of-the-art on this dataset using a single model. We used transfer learning and tested our model on the Dresden Database for Camera Model Identification, with an overall test accuracy of over 99% for 19 models. In addition, we demonstrate that the proposed pipeline is suit- able for other image-forensic classification tasks, such as, detecting the type of post-processing applied to an image with an accuracy of 96.66% - which indicates the generality of our approach.
deepmind-research
This repository contains implementations and illustrative code to accompany DeepMind publications
instagram-scraper
scrapes medias, likes, followers, tags and all metadata. Inspired by instagram-php-scraper,bot
PharmaHacks2022_AR-r-OW
random-promoter-dream-challenge
RemNet-remnant-convolutional-neural-network-for-camera-model-identification
TIA2020-Recurrent-3D-DenseUNet
muntakimrafi's Repositories
muntakimrafi/TIA2020-Recurrent-3D-DenseUNet
muntakimrafi/PharmaHacks2022_AR-r-OW
muntakimrafi/RemNet-remnant-convolutional-neural-network-for-camera-model-identification
muntakimrafi/deepmind-research
This repository contains implementations and illustrative code to accompany DeepMind publications
muntakimrafi/random-promoter-dream-challenge
muntakimrafi/awesome-datascience
:memo: An awesome Data Science repository to learn and apply for real world problems.
muntakimrafi/CellOracle
This is the alpha version of the CellOracle package
muntakimrafi/ChromBPNet-torch
This repository hosts a minimal version of a Python API for BPNet.
muntakimrafi/CisRegModels
Scripts for building computational models of gene regulation with tensorflow
muntakimrafi/compute-canada-hpc
Beginner tutorials and help for using Compute Canada's High Performance Computer. Learn to setup and run a Jupyter Notebook!
muntakimrafi/Deep-Learning-Papers-Reading-Roadmap
Deep Learning papers reading roadmap for anyone who are eager to learn this amazing tech!
muntakimrafi/effcossim
Efficient Pairwise Cosine Similarity Computation
muntakimrafi/enforemer_embeddings
Repository containing code to extract the embeddings of the Enformer model.
muntakimrafi/evolution
This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'
muntakimrafi/grav-theme-ceevee
Ceevee is a clean, modern, fully responsive site template for your resume and portfolio. With this template, you can easily introduce yourself and showcase your works to future clients and employers. Also, it is flexible and easy to customize so you even use this template as a creative, business or portfolio site for your company.
muntakimrafi/improved_CcGAN
Continuous Conditional Generative Adversarial Networks for Image Generation
muntakimrafi/keras-genomics
Genomics layers for Keras 2
muntakimrafi/keras-inception-resnet-v2
The Inception-ResNet v2 model using Keras (with weight files)
muntakimrafi/kipoiseq
Standard set of data-loaders for training and making predictions for DNA sequence-based models.
muntakimrafi/KMC
Fast and frugal disk based k-mer counter
muntakimrafi/ML-Tutorial-For-Stem-Cell-Network
muntakimrafi/muntakimrafi.github.io
muntakimrafi/open_model_zoo
Pre-trained Deep Learning models and demos (high quality and extremely fast)
muntakimrafi/pyfaidx
Efficient pythonic random access to fasta subsequences
muntakimrafi/pytorch-image-models
PyTorch image models, scripts, pretrained weights -- ResNet, ResNeXT, EfficientNet, EfficientNetV2, NFNet, Vision Transformer, MixNet, MobileNet-V3/V2, RegNet, DPN, CSPNet, and more
muntakimrafi/pytorch-original-transformer
My implementation of the original transformer model (Vaswani et al.). I've additionally included the playground.py file for visualizing otherwise seemingly hard concepts. Currently included IWSLT pretrained models.
muntakimrafi/scBasset
Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.
muntakimrafi/streamlit-leaderboard
A general purpose leaderboard for small ML competitions using Streamlit
muntakimrafi/streamlit-leaderboard-1
Make simple competition leaderboard using streamlit in one file of code
muntakimrafi/tpunicorn
Babysit your preemptible TPUs