murphycj2

murphycj2's Stars

• scverse/scvi-tools

  Deep probabilistic analysis of single-cell and spatial omics data

  Language:Python1.2k350

• bwa-mem2/bwa-mem2

  The next version of bwa-mem

  Language:C++721101

• mskcc/vcf2maf

  Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

  Language:Perl373216

• zwdzwd/transvar

  TransVar - multiway annotator for precision medicine

  Language:Python11834

• oncokb/oncokb-annotator

  Annotates variants in MAF with OncoKB annotation.

  Language:Python12261

• docker/build-push-action

  GitHub Action to build and push Docker images with Buildx

  Language:TypeScript4.4k558

• zstephens/neat-genreads

  NEAT read simulation tools

  Language:Python9527

• igvteam/igv-reports

  Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

  Language:Python34952

• Boyle-Lab/Blacklist

  Application for making ENCODE Blacklists

  Language:C++26838