mzavolan

Pinned Repositories

APAeval
Community effort to evaluate computational methods for the detection and quantification of poly(A) sites and estimating their differential usage across RNA-seq samples
Language:Python13 8 26814
htsinfer
HTSinfer infers metadata from High Throughput Sequencing (HTS) data
Language:Python0 0 00
SUPPA_supplementary_data
Supplementary data
Language:R0 0 00
genomepy
genes and genomes at your fingertips
Language:Python383 6 12538
bindz-rbp
RBP module for bindz, a bioinformatics tool to detect regulators' binding sites on RNA sequences.
Language:Roff7 6 241
mirflowz
Snakemake workflow for the mapping and quantification of miRNAs and isomiRs from miRNA-Seq libraries.
Language:Python6 4 831
RCRUNCH
Workflow for automated (e)CLIP analysis. From raw fastq to peak calling and motif analysis.
Language:Python6 4 121
TECtool
TECtool uses mRNA and 3’ end sequencing data to identify novel terminal exons.
Language:Python7 8 55
zarp
The Zavolab Automated RNA-seq Pipeline
Language:Python35 6 915
zarp-cli
A user-friendly command-line interface for the ZARP RNA-seq analysis workflow
Language:Python5 5 491

mzavolan's Repositories

mzavolan/htsinfer
HTSinfer infers metadata from High Throughput Sequencing (HTS) data
Language:Python0 0 00
mzavolan/SUPPA_supplementary_data
Supplementary data
Language:R0 0 00