zavolanlab/bindz-rbp

Issues

• Refactor for ver 1.1.0

  #55 opened 3 years ago by AngryMaciek
  3

• LogLik_ratio_fg_bg

  #60 opened 3 years ago by AngryMaciek
  0

• Simplify the UI

  #52 opened 3 years ago by AngryMaciek
  2

• Improve pipeline output

  #50 opened 3 years ago by AngryMaciek
  1

• Project logo

  #53 opened 3 years ago by AngryMaciek
  2

• Replace create outdir rule with onstart directive

  #51 opened 3 years ago by AngryMaciek
  0

• Move CI from Travis to GitHub Actions

  #49 opened 3 years ago by AngryMaciek
  1

• New name

  #48 opened 3 years ago by AngryMaciek
  1

• Non-reproducible md5 checksums of R plots

  #24 opened 3 years ago by AngryMaciek
  2

• Pipeline testing with singularity containers for snakemake rules

  #10 opened 4 years ago by AngryMaciek
  15

• CI tests with macOS

  #12 opened 4 years ago by AngryMaciek
  0

• Pipeline documentation missing

  #13 opened 4 years ago by AngryMaciek
  2

• Aesthetic modifications to the heatmap

  #34 opened 4 years ago by AngryMaciek
  0

• Logomaker Error while plotting some sequence logos

  #33 opened 4 years ago by AngryMaciek
  0

• Rule error while plotting seq.logos

  #32 opened 4 years ago by AngryMaciek
  0

• plot_sequence_logos incorrect parallelization

  #30 opened 4 years ago by AngryMaciek
  0

• cluster execution support?

  #3 opened 4 years ago by AngryMaciek
  1

• Heatmap annotation with motif's sequence logos

  #26 opened 4 years ago by AngryMaciek
  1

• Generating sequence logos for the input PWMs

  #23 opened 4 years ago by AngryMaciek
  0

• Plot the binding sites for distinct motifs on the input RNA sequence

  #16 opened 4 years ago by AngryMaciek
  4

• Code coverage measure

  #9 opened 4 years ago by AngryMaciek
  1

• Sort binding sites in the final table

  #20 opened 4 years ago by AngryMaciek
  0

• Combine MotEvo results into one TSV file

  #15 opened 4 years ago by AngryMaciek
  0

• CI Setup

  #4 opened 4 years ago by AngryMaciek
  6