error with pod5 convert to_fast5

[mocherry]

Dear all,

when trying to run:
pod5 convert to_fast5 *.pod5 --output pod5_to_fast5/

I get the following error:
POD5 has encountered an error: '1 inputs do not exist: {WindowsPath('*.pod5')}'

It works with single files, but is cumbersome with hundreds of them.

Thanks and best,
Matthias

[HalfPhoton]

Hi @mocherry,
It looks like the wildcard expansion doesn't work on windows.

You can supply a directory path instead and use the --recursive argument if you want to recurse sub-directories.
Only .pod5 files will be loaded.

Kind regards,
Rich