nanoporetech/pod5-file-format

Issues

• Troubleshooting Conversion of Fast5 Files to Pod5 Format

  #122 opened 2 months ago by biozzq
  12

• pod5 filter get killed

  #124 opened 2 months ago by yinyuanmtu
  5

• error：XX.fast5 is not a multi-read fast5 file

  #123 opened 2 months ago by moxqiang
  2

• pod5 convert fast5 warning: Failed to read key read_XXX

  #121 opened 3 months ago by creaturemoon
  2

• Missing conda pod5 package

  #119 opened 3 months ago by Salome-Brunon
  1

• Undefined references to libarrow symbols when using the libpod5.a

  #102 opened 3 months ago by hiruna72
  4

• No documentation regarding multi-file pod5 dependency

  #120 opened 3 months ago by VasLem
  2

• Getting the signal chunk size of a pod5 file

  #118 opened 3 months ago by hiruna72
  1

• getrandom error with pod5 convert fast5

  #116 opened 4 months ago by cocvincent
  14

• error with pod5 convert to_fast5

  #113 opened 4 months ago by mocherry
  1

• MantaControl': Unable to read fast5 file at /path/: HDF5 exception",

  #117 opened 4 months ago by franztastic
  2

• Reader class attributes immutable (Cannot edit "sample_id" field of mutable read object)

  #115 opened 4 months ago by jennifergribble-nanopore
  1

• Cannot install pod5 through pip on ARM due to dependency issues

  #114 opened 4 months ago by hasindu2008
  11

• pod5 subset/filter in preparation for dorado duplex is slow

  #112 opened 4 months ago by wilsonte-umich
  5

• Semaphore hissy fit at the end of subset run

  #111 opened 5 months ago by mp15
  1

• Scratch/tmp pod5 problem

  #110 opened 5 months ago by Macdot3
  21

• option to split pod5 by size/read number

  #109 opened 5 months ago by olawa
  3

• pod5 webserver memory error

  #108 opened 5 months ago by ranitori
  2

• Failed requirement 'flatbuffers/2.0.0@nanopore/testing' from 'conanfile.py

  #101 opened 6 months ago by hiruna72
  3

• V0.3.6 pod5 view "Error while processing"

  #106 opened 6 months ago by roo-weed
  3

• pod5 view does not work for some data since version 0.3.0

  #107 opened 6 months ago by davidsilvapires
  6

• pod5 filter/ subset failed with TypeError: enable_string_cache() missing 1 required positional argument: 'enable'

  #105 opened 6 months ago by jkh00
  3

• pod5 view fails with polars.exceptions.ColumnNotFoundError: not_set

  #104 opened 6 months ago by janpb
  2

• Metadata editing in pod5 files

  #100 opened 6 months ago by DCossey
  10

• Segmentation fault (core dumped) when trying to run pod5 convert fast5

  #103 opened 6 months ago by DepledgeLab
  9

• fast5 > pod5 conversion is very slow when input and output are on the same physical HDD?

  #99 opened 6 months ago by ItokawaK
  2

• fast5 to pod5 conversion issue

  #97 opened 6 months ago by HalfPhoton
  11

• pod5 inspect to work with multiple pod5s

  #98 opened 7 months ago by Kirk3gaard
  3

• Update documentation for subset from inspect reads

  #96 opened 7 months ago by Kirk3gaard
  2

• Mysterious freeze in pod5 convert

  #91 opened 7 months ago by maximus-sci
  6

• pod5 filter freeze

  #95 opened 7 months ago by diego-rt
  3

• Can't install on arm

  #94 opened 7 months ago by Psy-Fer
  4

• Is fast5 converted form pod5 different from the fast5 saved by the sequencer?

  #81 opened 7 months ago by onkar2470
  1

• Pod 5 subsets

  #92 opened 7 months ago by Jeff-Field
  1

• Q: `pod5 subset <..> --threads` takes a lot of resources

  #93 opened 7 months ago by sklages
  2

• Python 3.12 Installation error with lib-pod5 version conflicts

  #78 opened 7 months ago by zg404
  5

• assets are missing in the latest release

  #90 opened 7 months ago by hiruna72
  1

• Unable to set relative path --one-to-one directory

  #89 opened 7 months ago by RenscoHogers
  8

• Fast5 to pod5 failure

  #84 opened 7 months ago by pilaralv
  1

• ModuleNotFoundError: No module named 'lib_pod5.pod5_format_pybind'

  #88 opened 7 months ago by yoeHuuui
  5

• pod5 subset job with double free or corruption error

  #87 opened 7 months ago by antoinefelden
  12

• ModuleNotFoundError: No module named '_version'

  #85 opened 8 months ago by npavlovikj
  6

• [errno 30] Read-only file system

  #83 opened 8 months ago by zalibke
  1

• pod5 convert to_fast5 aborts with Errno 11, flags=13, o_flags=242

  #79 opened 8 months ago by hartnegg
  1

• input file 'is not a multi-read fast5'

  #75 opened 8 months ago by yanchunzhang
  1

• fast5 to pod5 error : "can't locate attribute: 'median_before"

  #86 opened 8 months ago by Toinax
  0

• memory error

  #82 opened 8 months ago by aCoalBall
  13

• Pod5 install error

  #80 opened 8 months ago by keenhl
  3

• Get the set of raw signal files from a pod5 dataset given a list of read ids.

  #77 opened 9 months ago by hiruna72
  4

• Signal and record compression methods

  #76 opened 9 months ago by hiruna72
  9