nanoporetech/taiyaki

Issues

• trim_start and trim_end

  #121 opened 3 years ago by Flower9618
  0

• Issue running prepare_mapped_reads.py

  #107 opened 4 years ago by SanglierA
  4

• "reference seqeunces contain ambiguous bases not found in the provided alphabet and will be skipped."

  #120 opened 3 years ago by swZhang1
  1

• question about 'flipflop_remap'

  #118 opened 3 years ago by Flower9618
  2

• mixed bases allowable in reference.fasta?

  #117 opened 3 years ago by niphilli
  1

• Error with guppy using a new model trained with taiyaki

  #115 opened 4 years ago by jlaroche
  2

• Error during training

  #116 opened 4 years ago by gmoneyomics
  0

• Does mGru_flipflop_model_r941_DNA.checkpoint exist?

  #114 opened 4 years ago by Linkrw12
  4

• Distributed multiple GPUs launch failed

  #112 opened 4 years ago by weir12
  1

• Scripts to extract mod info from hdf5 files

  #111 opened 4 years ago by callumparr
  2

• kkk

  #108 opened 4 years ago by Ballad
  0

• GPU accelerated prepare_mapped_reads.py?

  #105 opened 4 years ago by Linkrw12
  2

• error with newly created checkpoint file

  #89 opened 4 years ago by DeanH10
  4

• Installation issues

  #104 opened 4 years ago by addyblanch
  0

• Taiyaki train

  #93 opened 4 years ago by marcpaga
  1

• Low coverage directly adjacent to adapter (polyA)

  #84 opened 4 years ago by Wildstrubu
  3

• Bug: naming modified bases with lowercase characters

  #103 opened 4 years ago by marcpaga
  1

• Restarting from previous checkpoint

  #78 opened 4 years ago by mbhall88
  0

• make multiGPU_test: AttributeError: 'DistributedDataParallel' object has no attribute 'sublayers'

  #64 opened 4 years ago by yao12310
  0

• R10 training models

  #77 opened 4 years ago by nbeckloff
  3

• Training a different architecture: ModuleNotFoundError: No module named 'netmodule'

  #102 opened 4 years ago by organic-chemistry
  4

• AssertionError: Input not finite

  #99 opened 4 years ago by dikkeaap
  2

• Predicting squiggles with taiyaki

  #96 opened 4 years ago by nemitheasura
  3

• Restarting from a checkpoint

  #90 opened 4 years ago by techsavy12
  3

• AttributeError: 'GRU' object has no attribute '_flat_weights_names'

  #94 opened 4 years ago by jannessauer
  3

• Guppy version?

  #100 opened 4 years ago by dikkeaap
  1

• How to ouptut modified base with megalodon

  #101 opened 4 years ago by organic-chemistry
  1

• Mapped Read File == resquiggle?

  #98 opened 4 years ago by pabloacera
  1

• Using Fast CTC Decode with Taiyaki

  #97 opened 4 years ago by prtksngh
  3

• Speeding up prepare_mapped_reads

  #73 opened 5 years ago by mbhall88
  8

• Large number of reads cannot mapped successfully after prepare_mapped_reads.py

  #95 opened 4 years ago by duolinwang
  0

• Approximate time to finish prepare_mapped_reads

  #92 opened 4 years ago by marcpaga
  4

• Evaluation Method

  #91 opened 4 years ago by techsavy12
  2

• Per Read Modified Base Reference

  #86 opened 4 years ago by techsavy12
  3

• Not enough chunks passing the filters during training

  #88 opened 4 years ago by katjahauser
  2

• Preparation of ab initio training set - how to choose corresponding ground truth segments

  #87 opened 4 years ago by katjahauser
  2

• CPU

  #85 opened 5 years ago by techsavy12
  1

• Begginer Questions

  #82 opened 5 years ago by techsavy12
  2

• Pretrained model for RNA?

  #76 opened 5 years ago by HirokiU-RCAST
  1

• sequence length for training

  #83 opened 5 years ago by DeanH10
  1

• Stop condition for training

  #75 opened 5 years ago by mbhall88
  3

• Custom network can not run on guppy?

  #65 opened 5 years ago by d05943006
  3

• Where to get "pretrained" model?

  #72 opened 5 years ago by sequinstandards
  1

• Why are signal lengths per nucleotide always multiples of 12?

  #68 opened 5 years ago by RaverJay
  3

• Compatibility with Promethion/Modified Bases

  #61 opened 5 years ago by billytcl
  1

• Metagenomics with multiple references

  #70 opened 5 years ago by davidvilanova
  1

• --fastq output throws numpy error

  #69 opened 5 years ago by callumparr
  2

• Support for R 10.3

  #67 opened 5 years ago by Serka-M
  2

• OSError: [Errno 116] Stale file handle

  #66 opened 5 years ago by johnnyasena
  2

• Trained model tend to give too high a modified probability for each candidate base

  #63 opened 5 years ago by weir12
  0