Pinned Repositories
centWaveP
A fork of centWave - LC/MS peak detection with wavelets.
compound-discoverer-spectral-stitching
Allows the use of multiple, interleaved, scan segments with Compound Discoverer
enrich.no12c
Proof of concept untargeted enrichment detection
entrainment-freq
macha
Macha is an unpublished suite of tools for metabolomics analysis. This includes novel algorithms for ROI detection for orbitrap data (webroi), baseline estimation for orbitrap data (ahull.baseline) and peak model estimation using skewed gaussian distributions (findcomponenets), fast peak grouping (dengroup and kernelsplit), and wrappers for warpgroup and mz.unity (warpgroup.nmacha unityme). Originally intended to improve on the result quality of existing metabolomic workflows. Ultimately I came to see the chromatographic-peak driven model of processing MS data as flawed and lost interest in this project. Some of the code remains useful.
metabolomics.project.collection
Random scripts regarding metabolomics
mz.unity
mz.unity is an R package for detecting and exploring complex relationships in accurate-mass mass spectrometry data
qe.source.osc
Analysis of QE signal oscillation
warpgroup
The warpgroup algorithm takes multiple LC/MS samples and determines: 1. Segregation of those peaks into compound groups; 2. Per-group consensus integration bounds; 3. Integration bounds for samples in which no peak was detected.
credential
nathaniel-mahieu's Repositories
nathaniel-mahieu/mz.unity
mz.unity is an R package for detecting and exploring complex relationships in accurate-mass mass spectrometry data
nathaniel-mahieu/warpgroup
The warpgroup algorithm takes multiple LC/MS samples and determines: 1. Segregation of those peaks into compound groups; 2. Per-group consensus integration bounds; 3. Integration bounds for samples in which no peak was detected.
nathaniel-mahieu/centWaveP
A fork of centWave - LC/MS peak detection with wavelets.
nathaniel-mahieu/metabolomics.project.collection
Random scripts regarding metabolomics
nathaniel-mahieu/compound-discoverer-spectral-stitching
Allows the use of multiple, interleaved, scan segments with Compound Discoverer
nathaniel-mahieu/enrich.no12c
Proof of concept untargeted enrichment detection
nathaniel-mahieu/entrainment-freq
nathaniel-mahieu/pleiad
Targeted. DTW. Isotopologues.
nathaniel-mahieu/qe.i.dist
nathaniel-mahieu/qe.source.osc
Analysis of QE signal oscillation
nathaniel-mahieu/macha
Macha is an unpublished suite of tools for metabolomics analysis. This includes novel algorithms for ROI detection for orbitrap data (webroi), baseline estimation for orbitrap data (ahull.baseline) and peak model estimation using skewed gaussian distributions (findcomponenets), fast peak grouping (dengroup and kernelsplit), and wrappers for warpgroup and mz.unity (warpgroup.nmacha unityme). Originally intended to improve on the result quality of existing metabolomic workflows. Ultimately I came to see the chromatographic-peak driven model of processing MS data as flawed and lost interest in this project. Some of the code remains useful.
nathaniel-mahieu/bitcoin
Bitcoin Core integration/staging tree
nathaniel-mahieu/codeshare
Code I'm working on and sharing with people.
nathaniel-mahieu/cplexAPI
:exclamation: This is a read-only mirror of the CRAN R package repository. cplexAPI — R Interface to C API of IBM ILOG CPLEX
nathaniel-mahieu/Cthulhu
Arduino Library and Example code for using the Cthulhu Shield
nathaniel-mahieu/doRedis
R/foreach Redis backend for parallel computing
nathaniel-mahieu/ExData_Plotting1
Plotting Assignment 1 for Exploratory Data Analysis
nathaniel-mahieu/hablar
Intuitive NA-handling in R
nathaniel-mahieu/JH_Machine_Learning_P1
Project for coursera class
nathaniel-mahieu/kisscartoon_playlistmaker
Turns Kiss Cartoon Into VLC Playlists
nathaniel-mahieu/knitr_template
nathaniel-mahieu/metabolomic-feature-reduction-2017
nathaniel-mahieu/NetID
A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery
nathaniel-mahieu/nextflow-r-patterns
Nextflow library version management with renv and docker. Also distributing custom code to nextflow nodes.
nathaniel-mahieu/pixie-light-stuff
nathaniel-mahieu/pluck_bug_example
nathaniel-mahieu/qe.sens.eval
nathaniel-mahieu/RepData_PeerAssessment1
Peer Assessment 1 for Reproducible Research
nathaniel-mahieu/xcms
This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis