Issues
- 0
Problems with multiple definitions of certain header files during configuration during installation
#60 opened - 1
- 0
potential bug in pasteFiles
#58 opened - 0
- 1
ASVCF version
#56 opened - 6
Z-score or effect and standard error
#55 opened - 0
fSNP not tested?
#53 opened - 0
- 7
- 0
Imputation quality score (IA)
#50 opened - 2
Expected distribution of Pi
#49 opened - 1
Estimated computation time too long
#48 opened - 2
Identical results for close SNP
#47 opened - 5
First row of RASQUAL output
#46 opened - 5
- 4
- 17
QQ plot from rasqual P-values
#43 opened - 0
QTL Enrichment Analysis
#42 opened - 1
Permutations and RASQUAL results
#41 opened - 6
ASVCF Memory Usage
#40 opened - 2
Include other covariates
#39 opened - 1
Do covariates need to be normalized?
#38 opened - 3
Mandatory inputs
#37 opened - 1
- 1
Visualizing QTLs (coverage boxplot)
#35 opened - 1
MAF filtering with -a uses > rather than >=
#34 opened - 6
- 12
Correlated peaks not sharing QTLs
#32 opened - 6
- 2
Handling peaks with influential points
#30 opened - 2
Number of test SNPs
#29 opened - 3
RASQUAL with biological replicates
#28 opened - 1
Understanding Effect Sizes
#27 opened - 2
sample specific offsets
#26 opened - 3
Minor allele frequency filtering
#25 opened - 4
Output line without information
#24 opened - 2
- 7
Get p-value for each feature-variant test
#22 opened - 5
Multiple comparisons correction
#21 opened - 1
Can we use non sequencing based inputs?
#20 opened - 12
2707 caQTL in RASQUAL paper
#19 opened - 3
if Indel can be used in VCF input now
#18 opened - 2
- 3
- 2
condition specific eQTLs
#15 opened - 2
- 4
Using -m and -l
#13 opened - 4
AS counts and permutation test
#12 opened - 4
qvalue nan error
#11 opened - 2
segmentation fault with covariates file
#10 opened