naturalis/galaxy-tool-BLAST

A new tool and wrapper for the identification with blastn

galaxy-tool-BLAST

Wrapper for BLASTn; perform Blast searches and find the associated taxonomy.

Installation

Manual

Clone this repo in your Galaxy Tools directory:
git clone https://github.com/naturalis/galaxy-tool-BLAST

Make the scripts executable:
chmod 755 galaxy-tool-BLAST/blastn.sh
chmod 755 galaxy-tool-BLAST/blastn_wrapper.py

Append the file tool_conf.xml:
<tool file="/path/to/Tools/galaxy-tool-BLAST/blastn.xml" />

Ansible

Depending on your setup the ansible.builtin.git module could be used.
Install the tool by including the following in your dedicated *.yml file:

- repo: https://github.com/naturalis/galaxy-tool-BLAST
  file: blastn.xml
  version: master

Create Blast databases

See the wiki for creation of reference databases.