Pinned Repositories
barcode-constrained-phylogeny
Pipeline for building topologically-constrained phylogenies from DNA barcode data
Hemiphot
Analysis of hemispherical images
imgpheno
Image feature extraction in Python
markdown2scorm
Convert markdown documentation to SCORM
mebioda
Course repository for Methods in Biodiversity Analysis
openstack-docs
Documentation resources IT facilities Naturalis
sdmdl
Species Distribution Modelling using Deep Learning
supersmart
Self-Updating Platform for the Estimation of Rates of Speciation, Migration And Relationships of Taxa
trait-geo-diverse-dl
Ecological Niche Modelling Using Deep Learning
wgs2ncbi
Toolkit for preparing genomes for submission to NCBI
Naturalis Biodiversity Center's Repositories
naturalis/sdmdl
Species Distribution Modelling using Deep Learning
naturalis/mebioda
Course repository for Methods in Biodiversity Analysis
naturalis/galaxy-tool-lca
naturalis/galaxy-tool-taxonmatcher
Find for your input taxonomy the taxonomy from an other database
naturalis/barcode-constrained-phylogeny
Pipeline for building topologically-constrained phylogenies from DNA barcode data
naturalis/barcode_validator
Standardized validation of barcodes
naturalis/DWCAConfig
DWCA Configuratie bestanden om data te downloaden uit ES (NBA)
naturalis/mycodiversity
Pipelines for analyzing fungal diversity
naturalis/seshat-trait-data-domesticates
Repository for aggregating comparative trait data for Ungulates and Poaceae and preparing for submission to the SESHAT database
naturalis/mtdna-reference-database
Reference database of panels of genomes for population-level aDNA identification
naturalis/arise-metabarcoding-biodiversity
ARISE metabarcoding
naturalis/arise-soil-pilot-analysis
Repository for statistical analysis of spatial structure in the ARISE soil pilot
naturalis/barcode-classify-protax-fungi
Profiling PROTAX-fungi for quick and coarse classification of ITS metabarcoding reads
naturalis/barcode-classify-transformer
naturalis/barcode-phylogenetic-diversity
Repository for experiments with QIIME-based alpha/beta PD metrics
naturalis/bioblend-test
Example implementation of bioblend galaxy client
naturalis/browbrow
Brownian motion in a browser window
naturalis/comp-genome-mammals-cmah
Repository for the comparative analysis of CMAH inactivation in Mammalian genomes
naturalis/DNABERT_S
DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models
naturalis/es-client
Java utility library for working with Elasticsearch
naturalis/evobio2
Instructions for setting up your computer for Evolution Biology 2 course of UL
naturalis/galaxy-pipeline-hybseq
End-to-end implementation of HybSeq analysis in Naturalis's Galaxy portal
naturalis/galaxy-tool-add-metadata-otutable
naturalis/galaxy-tool-BLAST
A new tool and wrapper for the identification with blastn
naturalis/galaxy-tool-cutadapt
naturalis/galaxy-tool-make-otu-table
naturalis/galaxy-tool-sickle-pe
Galaxy wrapper for sickle paired-end trimming, input is a zip file
naturalis/PROTAX
Software for training probabilistic taxonomic classifier PROTAX
naturalis/snakemake-parallel-test
naturalis/sysbio-independent-contrasts
Demonstration of independent contrasts calculations for spider length dimorphism